pnp6 (LOC108264829,LOC108424368,LOC103033869)


Basic Information

Item Value
gene id pnp6
gene name LOC108264829,LOC108424368,LOC103033869
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14771280 ~ 14781553 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927774.2
tctctctctctccgtccgTTTCCCAGTTCTCATTGCGCTCTGCCTCTGGGTCACTGAGCGGCTCAGCCTGTTAGAAAACTGGATTATCAGTGCGGTTTTTAAAGGAGCTCTGCGACTCCACCTCCATCACGCCATCCCTCGAGAGTATCACGTATTTATGACCCGTCGCCTGGTTACAATTAATCTTCCTGTAACCGAAATTAAACAGTAAAGTCGTTGCTCTGGTTCCGCACCGCAGCCGCTCCGGACATGTCCTCATCCAGCCAGTGCAGGTCCAAATATGATGAATGCAAAGAGACAGTAGACTGGCTGCTGGCTCACACAAACATCCAGCCAAAAGTTGCCATTATCTGTGGATCAGGTCTTGGTGGCCTGTCAGACCTGCTGAGCAACAGgactgtttttctttataaGGACATCCCACATTTCCCTCACAGTACAGTAGCAGGACATGCAGGTCAGCTGGTGTTCGGGGAGCTGAAAGGAAAGCAGTGTGTTTGCATGCAAGGCCGCTTTCACTTCTACGAGGGCTATGACACTGCTGTGGTCACATTCCCAGTACGCGTCTTTTTCCTTCTTGGAGTTGAGACTTTGATTGTTACAAATGCTGCAGGAGGGTTAAACTCCAATTTTAAGGTGGGAGACATTATGATGATCAAGGACCACATCAATATTCCTGGTTTTGCAGGTCAGAATCCTCTGTGTGGCCCAAATGATGAGAGGTTTGGCGTACGCTTTCCCTGCATGTCAGATGCATATGATAAAGACTTGGCACAGCTGGCCAGGCAGATAGCCGAGGAGCAGGGCTGTGCTAATTTCATCAAACAGggagtatactgtatgttggcTGGACCTACCTACGAGACCATAGCTGAGTGTAAAATGCTTCAGTTACTGGGGGCAGATGCTGTAGGAATGAGCACGGTACCTGAGGTGGTGGTGGCACGTCACTGTGGCCTGCGTGTCTTTGGCCTCTCCCTCATTACCAACAAGGTGGTGTCCGACTACAGCAGTGAGGAGCGCACCAACCATGAGGAGGTTCTTGAGACCACACGCATGCGTACTCAAGATCTTCAGCGCCTGGTCAGTCATCTCGTGGAAAAGATTTAATGTCATGCTTCCTGGTGCTCAGGCAACCTAACACTAAAGCTGACATAACCAAAACAGCATGTCTAAAATGCTACAATGAAATTAATGCAGTAATAACAGATTTAGGGATTATATTATTAGCAGTAAAGAGTAATTTATAACAgggttttatttatatgaatgcactAGCAATCTGACACTTTACGATTTAATCCCAGCAATATTAAGATTAGGTAGACTGCTatatttgaaaaatgatttatctACAGCTAACTCATATTTATTACTGTACATGATTGACACTCTTTTAATGACTCTTCCCTGTGAAACCTGCACTCGCTTAAATTACCATCTGCAGTCTACACTAAAGAGCAGTATCACAAGCCAGGGTACTCTGGAGACCAGAGACTGTGGGTGTTAATTTAACAGTGGCGGTTCTGCTGTGTGAACAGcgtgtgtatgtacatgtgtttGAGTATTACAAGTGGTTTATTCTGCTTTATTTGATAGTATACTCACCTCCCCATGCAAATCAAGTCAGCCTTAAGTAGACATTTATAAAGATGCCATTAGAACTGCAGTAAGCTGACTGATACTGTGTCTATTCTAAACCCATAGCCAATAGCCATGTATTTGATTCAAACTCTCTACCTCAATATTCTGAAGCCTTAGAACAAATATACAAACTTGAagtgctagatttttttttagtattcaCACAACACatagaaaaatatacattttatccaaACAAACTCATTAAGGTAGTTGTCAAACTCCTAAAGGAGACATCATGCAAATGCCTGTGCAAAAAGTACTGGAAACAAAAGGGtccataaataatattttacaatatgctatcaagcaaaaaaaaattctcatcgTCAGATTATTGTACTACACTGTGACCAGCACGATAGcctttatttgaattattttcatGCCAGACATGCCTCTCTTACTCAAAGAAAGAGTTGTAGAACAAACTAATGCACACATGCATCCACAGAGAGCAGCACACTAATGCCAGCAAAttattgtaatgatttataatcccgcTATGCGGTGTCACATGGAAGAGGATGAATTCCTATTTGAGTCTGTGTCCTGGTTTCTTACTAATGTTGTTTCTGGGAGTTTTCCTTGCTACTGCCACTAcatatctattgttaaaagcaccatacaaataaagttgaactgaactgaa

Function

NR:

description
purine nucleoside phosphorylase-like

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0004731 purine-nucleoside phosphorylase activity molecular_function

KEGG:

id description
K03783 punA, PNP; purine-nucleoside phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927774.2 True 2296 mRNA 0.43 6 14771280 14781553

Neighbor

gene id symbol gene type direction distance location
calb2a calb2,calb2a,LOC108264862,LOC107672188 coding downstream 10786 14748622 ~ 14760494 (-)
got2a got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360 coding downstream 28600 14735413 ~ 14742680 (-)
si:dkey-12e7.4 LOC108264682,LOC108424351,LOC106560815,LOC107578981 coding downstream 36125 14730120 ~ 14735155 (-)
syt19 LOC108263939 coding downstream 41674 14719885 ~ 14729606 (-)
si:dkey-12e7.1 si:dkey-12e7.1,LOC108264421,LOC108427511,LOC103035474,LOC107596938,LOC107583743,LOC107738678,LOC105904526 coding downstream 97918 14670313 ~ 14673362 (-)
slc38a8a slc38a8 coding upstream 188231 14969784 ~ 14978150 (-)
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding upstream 207235 14988788 ~ 15015137 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding upstream 237405 15018958 ~ 15026868 (-)
nrn1la nrn1l coding upstream 261745 15043298 ~ 15072495 (-)
edc4 edc4,LOC107733561,LOC107726309 coding upstream 294321 15075874 ~ 15105110 (-)
G99493 NA non-coding downstream 122287 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 167808 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 235270 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 251496 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 318173 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 367850 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 378650 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 389758 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 394622 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 516052 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 424272 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1208706 13550680 ~ 13562574 (-)
G98770 NA other downstream 1718969 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2347302 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2365999 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 565613 15347166 ~ 15357563 (-)
G101178 NA other upstream 3405894 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5198516 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5614313 20395866 ~ 20416574 (-)
G102566 NA other upstream 6172049 20953602 ~ 20966910 (-)

Expression


Co-expression Network