mctp2a (LOC108264697)


Basic Information

Item Value
gene id mctp2a
gene name LOC108264697
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15812514 ~ 15856112 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927790.2
CGCAACAAACCGGTCAAATGAGCCAGACAGCTTCAGAGGTTCTGAGTGTTTAAGAGTTTGTCGGATTCATGCTTTGCACAAGTCTGCAGTACATTTTTAACTGCCTATAGccATCAAAGAAATAATTGATCTCATCTCCAGTCAAAATGGACCCCAAGAAGAATAAAGTCTTATCCAAACTGCGAGATAAAACCAAGCCCCTGTTTAATGTGAAGATAGGGAAGAAAGTAAAGAAGACTCCCCTGCAATACAGGAGGAGCATTTCAGTACCAGACCTGTCAAGTGATCAATCCATGCCATCTTTTCTATACCCTACTGCTCAATCTTCAATCCCAGACTCGTTTGTTGAGCCAGCTCATTCACTTGCTCCTTATGAAACAAAGTGTGAAACCTCCAGCCTAACCGACAGTCTCACTGTCACAGATGCAGCATTATCTGCTAAGTGCACTGATCCATACACTGTTCCAGCCTCCCCACTTTCAAAAAGGGTCCTGGGCCAGCACATAATACTACAGACGCATCTCTGGATCAAGTTATTACCCCAAATACACCGTCCTCAGCCAGGTCCCTGGACCAATTTACTGCCCCATACACACCATCTTCAGCCAAGGCTCTGGACAACTTGATGCTTCCAAACACACCACCTACAATTATTTGTTCAGCATCAGACAGGCCAGCATTTATCAATATACCAGCCACGAAGGATAAaccagagagggaaagaaacacCACATGGTACATAGAGGACAGCGAGTCAGCTTGTAGCACACCATCTGAGGACCGCTCCTACATCTTCTGCCCTCCTGACCATGACCTGACAGGGTTAGAGCCTGCTACACCACGGTCCACAGAGATGTTTATTATCGGATCAGCTGAGGACAACAATGAAGTTTCCAATGAGACCAATGACTATGACACCAATTTCTCAGGAACAGAAACGAGAAGCTCAGGAGTGTGCAGTGAAGCCCAGGCTGTTCCAGCAGGTCAGAAGCTCCATTATCTCCTCACCATCAACTTGAGGGAAGGACGGAACCTGGCCATCAAAGACCGCTCTGGTACCAGTGACCCGTATGTCAAATTCAAAATAGATGGCAAGACAGTCTACAAAAGCAAGGTTGTGTACAAGAACCTTAATCCTACATGGAACGAGTGTTTCTCCATCCTCATCAGGGACCTGGAACAGACTGTCTATGTTAAGGTGTACGACCGGGATCTGAGATCTCGGGACTTCATGGGTTCAAGCGCCATCACTCTCAGTAACTTGGAGTTGGACAAAACATCTGAGATGATCCTGCGTTTGAAAGACCTTGGCAGTCTGGAAGAGGACATGGGAGTAATAATCTTAGACGCCTGTGTGTCCATCTGTGAGGGGCCCACCAAACGAAATAAATGGCCACTTAGGAGGAAAGGAAGCTTCAATAAGGGACAGCTCCGAGCGGCTGCCATGCAGAAAAGCCAAGTGTGGAGTGGAGTATACACTGTGGTGCTTGTGGAGGGGCAGGACATGCCTGAAAGCGGCCAAGGGGATGTCTTTGTCCGCTTCAAAATGGGGGAACAGAGGTTCCGAAGTAAGTATCTGTGCATTAAGACCAATCCACAGTGGAGGGAGAAGTTCGAATTCAACCGTTTCGAGGATGGCCAACCAGATGTGCTGCTGGTCGAGCTCTACTGCAAGAAGGGCAGAAAGTGTGTGGAATGCTGGGGAGGGATTGAACTTGACCTCTCACAGCTGCCAGCCAATACAAAACAGACATACAACGTGATTACAGGCAAAGGTCGACTGGTGTTTCTGGTCACACACAACCCCTGTCCTGGAGTTTCCATCTCTGACCTGGGCTCCACATCCTTAGACAATCCATACACCTATGAAAACACCCTGAAGAAATATTGTCTGCAGAAGACGCTGGATAATCTACGGGATGTCGGCTATCTCCAGGTCAAGGTTTTACGGGCTGCAGACCTTTCAGCTACAGATCTGAATGGTAAGAGTGACCCATTTTGTGTGTTGGAACTTGGGAACAGCAAGCTGCAAAGTCAAACCATCTATAAGACCCTCAATCCAGAATGGAGAACAGCCTTTACATTGCCAATTAAGGACATCCATGATGTCCTAATCCTGACTGTTTTTGGTGAAGATGGAGACAAAGCACCAGACTTTCTGGGGAAAGTTGCTATTCCTTTGCTTACTGTCTCTAATGGACAACAAATAACCAGTCCTTTGAAAAAGGACAATTTGGAAGATATGTCGAAAGGAAGCATTACACTGGAGATGAATGTTTTTTACAACCCAGTCAGAGCTGCCATTCGAACCTTCCGTCCCAAAGAAACAAAGTTTGAGGACAACCCAAAGTTCAACAAAAAGCTGTTAGCACGCCACATTTCCCGTGTGAGGAGGATCAGCATGGCCATTCTGTATACGTTGCAGTACATTAAGAGCTGCTTCCAGTGGGAGAGCACTCAGAGGAGCATCATTGCCTTCCTGGTCTTTGTATTGACAGTGTGGCACTTTGAGCTGTTCATGTTGCCTCTCTTCCTCCTGCTGCTTATCGGCTGGAACTATTTCCACATCACGCCAGGCGTGGGCAGCCACAGTCAGGACCTGGAGAGCATCTCTGCTGCAGAGGacgaagatgaagatgaaaagGAATCAGAGAAAAGAGGCCTGATAGAGAAAATCCATATGGTTCATGAAATTGTGCTCACCGTCCAATGTGTTCTCGATGAAATAGCATCCATCGGAGAAAGAGTAAAGAACACTTTCAACTGGTCAGTGCCGTTCTTGTCCCTCCTGGCCTGCTTTGTCATGTTCATTGCTACAGTTGCACTCTACTACATCCCTTTGCGCTACATTGTCTTGTTATGGGgtGTTAACAAATTTTCAAAGAAGCTCCGCAACCCGCATGTCATTGAAAACAACGAGCTACTGGATTTTCTCAGCAGAGTTCCATCTGATGTTCAAAAAGTGCAGTATAGCGAGCTGAGAGCGCCTGGCATCCAGAGTGCACAGAAGAAGAAGCGCTAGTGCTCATGCGAGTTGTTCTGGATGAAAGGGCGAGACAGTGGTTGAAAGTGGGCCCCTCCCTTCCTGTAGAATCAGGTGGAGCCCCCACCCATCAGACTTATCTCCTGTGGGGAggctatgagtgtgtgtgtgtgtgtgtgtgtgtatgtgtgatagaACATTATGTCACTCAGTGATTTGCAGACCAGCACGTTGGGATGTAATTAACAGAGCATGATCATGATAAAGAATGTAAAAGCAAAGTATCCCCAGCCGTGCAGCGATAATGCAAAACACAACAagcaattaataaattaattaatacaacaATACTATAAATTAATAAGTGACACAAAATGTCCTGGTGGTATGTAAATAATTTGAGGGTGACATGTTTTGTTTATCATTAAAAGGAGATGAGGCATTAATGCATTACAGGCATGATAAAGTATCTCCTCATTTAGACCGTATACAGCAaacaatattaatgaaaaatgcaATCAGAAATTGTGATGCAaacagttatatttattaaatggaAGAATGCAAATATGGCCTTttgtaaaatgttcaaattaatGTGTATGGATTACATGATTTGTATTGATATTTTTCAtcctatatattt

Function

NR:

description
multiple C2 and transmembrane domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927790.2 True 3629 mRNA 0.45 23 15812514 15856112

Neighbor

gene id symbol gene type direction distance location
mef2aa mef2a coding upstream 3398 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 140180 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 159227 15613280 ~ 15653287 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 210610 15522791 ~ 15601904 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding upstream 330377 15477466 ~ 15482137 (+)
LOC113534692 NA coding downstream 403333 16259445 ~ 16260173 (+)
LOC113534621 NA coding downstream 644648 16500760 ~ 16510979 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 908583 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 982763 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 1122823 16978935 ~ 16983976 (+)
G100079 NA non-coding upstream 78166 15671329 ~ 15734348 (+)
LOC117597598 NA non-coding upstream 203411 15607970 ~ 15609103 (+)
G99893 NA non-coding upstream 289790 15522020 ~ 15522724 (+)
G99854 NA non-coding upstream 344298 15467938 ~ 15468216 (+)
G99879 NA non-coding upstream 357475 15450819 ~ 15455039 (+)
G100097 NA non-coding downstream 3147 15859259 ~ 15859474 (+)
G100102 NA non-coding downstream 7179 15863291 ~ 15863493 (+)
G100103 NA non-coding downstream 7578 15863690 ~ 15863915 (+)
G100160 NA non-coding downstream 12435 15868547 ~ 15868764 (+)
G100161 NA non-coding downstream 13844 15869956 ~ 15870159 (+)
carmil2 carmil2,rltpr other upstream 466368 15300482 ~ 15346146 (+)
G99341 synm other upstream 1288034 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1770062 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1856163 13932539 ~ 13956351 (+)
G98972 NA other upstream 2023124 13785095 ~ 13789390 (+)
G100306 NA other downstream 493345 16349457 ~ 16349787 (+)
G100345 NA other downstream 744145 16600257 ~ 16601067 (+)
rgma NA other downstream 801489 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1544314 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1633434 17489546 ~ 17493092 (+)

Expression


Co-expression Network