cfdp1 (cfdp1,LOC105419833)


Basic Information

Item Value
gene id cfdp1
gene name cfdp1,LOC105419833
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15358403 ~ 15388947 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927805.2
TCCTGCACTTCCTTCTAGTCGCCATTCTTACTGTAGCTTGTGAAAGTTTTGGCGCCGGCTCTGTGGGGTCTGGAGGCTGTTCCACAAACCTTCCACACCCCTTCTTGAGTGCACGTTTTCTCTCTAGCAATAcagcaggtgttttttttttaaatttaatttattgttctCTTTAGTTGTCTTATTTTACTGCCAGGGTGAATAACTGTAGAAGAAAATGATGAATTATTCGGACTACGACTCGGAGGATTATTCCTCAAATGAAGATGAAGACTATGTTCCCTCTGATGACAACCTGAGTGAAGATGATTTAAATGAGTGTGAAAAGGAAGATGGCCTGGATGCAGAGGACCAAAGCGAAGCACCGAGAGAGCAGgtcaaaaagaagaagaagtcaaGTAAAGGCCTGTCTGCAAGgaaaaggaaaaaaggaggtTTGAAGCTGGAAGGAGGTGAGGAGGGTggcacagacaaacagaaagaggaagaagtaAAACTGCTCGATGAAAAGACAGTAGAAGAAGAACCCACCAAGGGTAAAGAGGAACAGCAGCAGAGAAAGGCGGATGATCTTTGGGCTAGTTTTTTAAGTGATGTCGGCCCGAGACCAAAAGCTGAGGCCCCAGGCTCGCATCAGCCCACAGCCGGTTCAGACAAAGTTAGTAAACCCAGTACAGAGTCTCCACACAAAGAACCGAAAGCCACAGGGGCCTCCAGAATCACAATAACAAAGGTGTATGACTTTGCAGGAGAAGAAGTTCGGGTTACTAAAGAGGTGGACGCTGACTCACGGGAGGCTAAAAGCTTTCTCaaaaaggaagagaaggaagagaaggaagaggagCAGCAGACCTCCATGTCTAAAGCTTCAGCTTCATCCTCCCTCACTGCTGGGCCCAGTGTGAAGAGACCAGCAGGGATGGGCAGCGTCCTGAGCCGTATTGGAGCAAAGAAGCCTAAAATGAGCACTCTGGAGAAGTCCAAGCTGGACTGGGACTCGTTCAAAGCAGAGGAGGGCATCACAGAAGAGCTAGCCATTCATAATCGCGGCAAAGAGGGGTACGTGGAGAGGAAGAACTTCTTGGAGAGGGTGGACCAGCGGCAGTTTGAGCTGGAGAAGAATGTTCGCCTTAGCAACATGAAACCATGACCGGAATGGACAAAGTGCATCCAGTAACATGCATACACAAAAACGTGGACTATTCACTCTGTTTTCTGGGTTTCTGTGGCAGCCCTGTTAACATCTGCCTCTGAGCTCAGATTTAAGTCCATCATTCACTCATGGCTGGTCTTATCTTCTGTACACTGAAATCATTAAGGAAGAAACaatagtggaaaaaaatgcCAAGATGATTGTTTCTAGTGAGAAAGAATCAGATTTACATTCATGTAGTGTAGCATGTGTAGTGGATCAGCCAAAACATTTTTGATGTCCAAATTTTGCTTACCATTGTAGGATATTTATACAGTAGATCTATCCTGCCTAAAacttaataaaattataaacagttAATCTACCCGCTGCCGTTTATGCTTTTGGCAAATTAAAGCTCGTTCCCAAGCTCTTAACCTGTCGTTTTTATGGTTTCTTTTCCCCAGAAATCTTCTTATATTAGATGTCTGTATATTGGTTttatatgtattaaaatatCTGTTTTCTGGAATTGAttctttataaataacatttcttaGCTAATAAGTGACCATTTGAGGCATGTTTGCAATGATTTCGGTATACGATTATAAATCATGGTAATCGTTTCCCTTATAGCCCAAGTGCAAAACTAATCAAAACAAAATTTGGACATCAAAATTTTCTTGGCTGCAATTCACCTAATAGGTTATCATCatgaaaaaaaaggcaaaggtCACATAGCCATCACTGGCACAAAAAGACCAAAGTAGTTCTCCATCAATGTCTCTGCAGAGCTTCATGCTTTCGTTGGGGTAACACACACGATTTGGCGCAGGCAACTacctgatgtgtgtgtcagaagAGAAAAGATACTAAACTACTCATGGCAGGGTGACTAGATTTCAGAAACATTGAGATACAAGACTTGTTGAAGGAGGTCCTTAGCACAGAGTGGTTACCTAGGCTGTAATTATTAGTCTTTGTTATTAGTCACTGTCTTAGACTCTGCGTTACATGCTCTTGTTGTTCTTTAACTCATCTGGTGTTTAAGCCCTTTTATGAGGTGAGTCAAGTGTGTTACAGAATGGAAAGCGTAAAAATATGCAGTGCATTGGGTTCACAGGACAAAAGCAGGGATCCCCTGCTGACTTTCATTCTCCGACATGAATAAAAGACCAGCGTTATCAGGCACAGCTCAAAATGAAAAAGCTACGTACAGTCCAAGACCTTCAGGGATGTATTCAGGATAAATAAAGGAGTGGTGGTGTTTGTTTCTATATGCATGTTGTTTCTATTTTGACAGTTTGCCTTGTTAAAGTTGATTGGTAATTACATCTCTTGTGCTGTAAATGTCTTTGACAATAAATCAAACCATCTGGTTTGACGTTTCTCTAAAA
>XM_034305509.1
ATTCCTGCACTTCCTTCTAGTCGCCATTCTTACTGTAGCTTGTGAAAGTTTTGGCGCCGGCTCTGTGGGGTCTGGAGGCTGTTCCACAAACCTTCCACACCCCTTCTTGAGTGCACGTTTTCTCTCTAGCAATAcagcaggtgttttttttttaaatttaatttattgttctCTTTAGTTGTCTTATTTTACTGCCAGGGTGAATAACTGTAGAAGAAAATGATGAATTATTCGGACTACGACTCGGAGGATTATTCCTCAAATGAAGATGAAGACTATGTTCCCTCTGATGACAACCTGAGTGAAGATGATTTAAATGAGTGTGAAAAGGAAGATGGCCTGGATGCAGAGGACCAAAGCGAAGCACCGAGAGAGCAGgtcaaaaagaagaagaagtcaaGTAAAGGCCTGTCTGCAAGgaaaaggaaaaaaggaggtTTGAAGCTGGAAGGAGGTGAGGAGGGTggcacagacaaacagaaagaggaagaagtaAAACTGCTCGATGAAAAGACAGTAGAAGAAGAACCCACCAAGGGTAAAGAGGAACAGCAGCAGAGAAAGGCGGATGATCTTTGGGCTAGTTTTTTAAGTGATGTCGGCCCGAGACCAAAAGCTGAGGCCCCAGGCTCGCATCAGCCCACAGCCGGTTCAGACAAAGTTAGTAAACCCAGTACAGAGTCTCCACACAAAGAACCGAAAGCCACAGGGGCCTCCAGAATCACAATAACAAAGGTGTATGACTTTGCAGGAGAAGAAGTTCGGGTTACTAAAGAGGTGGACGCTGACTCACGGGAGGCTAAAAGCTTTCTCaaaaaggaagagaaggaagagaaggaagaggagCAGCAGACCTCCATGTCTAAAGCTTCAGCTTCATCCTCCCTCACTGCTGGGCCCAGGATTAAGTCTGTCCCTCAGCCTGTGAAAGACAGAGCAGGGCGGAGATGCCTCCAGCTACACACGTCTTAGTGGACTTTGAAGATCAGAGAGAGAAGATGGGACAAAGAAGAAAGACAAGGGATGAAGTGG

Function

symbol description
cfdp1 Acts upstream of or within bone mineralization and cranial skeletal system development. Predicted to be located in kinetochore. Is expressed in brain; fin bud; head; otic vesicle; and yolk syncytial layer. Orthologous to human CFDP1 (craniofacial development protein 1).

NR:

description
craniofacial development protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927805.2 True 2532 mRNA 0.42 7 15358405 15388947
XM_034305509.1 False 1032 mRNA 0.47 6 15358403 15375400

Neighbor

gene id symbol gene type direction distance location
ctcf ctcf,LOC107583725 coding upstream 58824 15291924 ~ 15299579 (+)
ripor1 fam65a coding upstream 66953 15215050 ~ 15291450 (+)
ranbp10 ranbp10,LOC107583731 coding upstream 187484 15131265 ~ 15170919 (+)
necab2 necab2,LOC107672281,LOC106573751 coding upstream 389396 14885256 ~ 14969007 (+)
hydin hydin,LOC108264797,LOC108264078,LOC108264799,LOC108263932 coding upstream 480924 14784940 ~ 14877479 (+)
bcar1 bcar1 coding downstream 6156 15395103 ~ 15467776 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding downstream 88519 15477466 ~ 15482137 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding downstream 133844 15522791 ~ 15601904 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding downstream 224333 15613280 ~ 15653287 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding downstream 272045 15660992 ~ 15672334 (+)
G99819 NA non-coding upstream 134549 15223649 ~ 15223854 (+)
G99813 NA non-coding upstream 142687 15215391 ~ 15215716 (+)
G99786 NA non-coding upstream 177632 15176236 ~ 15180771 (+)
G99766 NA non-coding upstream 184968 15171332 ~ 15173435 (+)
G99705 NA non-coding upstream 299632 15055267 ~ 15058771 (+)
G99879 NA non-coding downstream 61872 15450819 ~ 15455039 (+)
G99854 NA non-coding downstream 78991 15467938 ~ 15468216 (+)
G99893 NA non-coding downstream 133073 15522020 ~ 15522724 (+)
LOC117597598 NA non-coding downstream 219023 15607970 ~ 15609103 (+)
G100079 NA non-coding downstream 282382 15671329 ~ 15734348 (+)
carmil2 carmil2,rltpr other upstream 12257 15300482 ~ 15346146 (+)
G99341 synm other upstream 833923 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1315951 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1402052 13932539 ~ 13956351 (+)
G98972 NA other upstream 1569013 13785095 ~ 13789390 (+)
G100306 NA other downstream 960510 16349457 ~ 16349787 (+)
G100345 NA other downstream 1211310 16600257 ~ 16601067 (+)
rgma NA other downstream 1268654 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 2011479 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 2100599 17489546 ~ 17493092 (+)

Expression


Co-expression Network