ighmbp2 (ighmbp2)


Basic Information

Item Value
gene id ighmbp2
gene name ighmbp2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14315835 ~ 14324438 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927815.2
TTTTCTTATGTGGTTCTCAAAGCTTCGGAGTCGACTCTCACTTCCCAGTGCCTAGACTCGGGGATTTGAATCTTTCTGGAATCGACTCCTGCTCCTAACGAAAGTGACTGCAGCGATGTTGTGGTGCGTGCAGAGATAGAGTCACAGAAATGGAGGTTGAAAGTTTCGTTTCCAAGACTCTTGAGCTCTTGCAAGAGGAGAGAGGAGCTGAGATAGAAGAAACAAGGGCATGGCAAAAGAATCTGTCACTAAAAAATCTACAACAGAAAGGAGTATGCTTGCTGAAACTTCAGATTGGAAGCCAAAGGACGGGAATGCATGGCAGACTTCTGGTTTCATTTGAGCCCCGGAAAAGTATCGGCCCTTCAGTTCTTCCCAGTCACAGCTTTGGACCTGGTGACATTGTGGGTCTTTACGAATCAGAAGGATGCAGCCAGCCTAATCAGCTTTGCTCAGGTGTGGTGACCCGTGTGACGCAAGCATCCATAACAGTTGCTTTTGATGAAACGCATGATGGCCTCAACCTGGAAAGTGATGGACTATACAATATTATGAAGCTTGCAAATGATGTAACTTATAAACGATTGACTCGTGCTTTAAATTCTTTGAATGGGTATAGAAGTGGTCCTGCCACCCATCTAATTAGTGTCCTTTTTGGTTACTCTGAGCCTGGAATGTTGTCACAGCAGAATGCTTTAGAGTGGATCAATAATGGATTAGACAGTTCTCAGCAGGAGGCTGTGTCATTCGCGCTCTCTCAGAAAGACGTTGCTATCATACACGGGCCACCAGGGACGGGGAAAACCACAACGGTGGTTGAAGTTATTCTACAGGCTGTAAAACAAGGCCAGAAGgttttgtgctgTGCTCCATCCAATGTGGCGGTGGATAATTTAGTGGAGCGCCTGGCTAAGAGCAAGGCTAAGGTCCTGCGCCTGGGACATCCAGCACGCCTGCTAGAGTCAATCCAGAAGCATTCACTGGATGCAGTGCTTGCACAGAGCGACAGCACCAACATCATCGCAGATGTCCGAAAAGACATGGATAAAGCCTTTAGTCATATAAAGAAAGTGCGTGACAAAGGACAGAGAAGCAGCCTAAGGCGAGAAATAGGAGAGCTGCGAAAGGAACTGAAGTCCAGGGAAGAGGTGGCCATCTCCCAAATCCTGAAAAGGGCCAGTGTTATTCTAGCAACCAACACTGGATCTAGTGATGATGGTCCACTGAAGTATTTGCCAAGCGAGCATTTCGACCTGGTGGTGATAGATGAATGTGCTCAGGCTCTGGAGAGCAGCTGTTGGATTGCACTGCTCAAAGCACGCAAGTGCATCCTGGCTGGAGACTACAAGCAGCTGCCACCCACAATTAAATCTCAGAATGCAGCTGCTAAAGGTCTGTCTGTGAGTTTAATGGAGCGGCTGATTCAGAAGTACGGAGACTCAATAGTTCGAATGCTGACCACTCAGTACCGTATGAACAGTGCCATCATGCAGTGGGCCTCAGAGCAGATGTACCAAGGGAAACTGACTGCACATCCTTCAGTGGAGAAACATTTATTGAGGGACCTGGCTGGTGTAACTCATGTTGAGGAGACCAGCATGCCTCTGCTCTTAATTGACACTGCTGGCTGTGGTCTTAATGAAATGGAGGACACAGATGAGCAGTCAAAAGGCAATCAGGGTGAAGTTGACATAGTGGCACTTCATGTGAAAACCTTGACTGAGGCTGGAGTGCAGGCCAAAGACATTGCAGTCATTGCACCTTATAACCTACAGGTAGATCTGCTAAGACAGAAACTCTCAAATGAGTATCCTGATCTGGAGATCAAATCTGTAGATGGCTTTCAAGGCAGAGAAAAGGAGGCAGTGCTGCTGTCTCTGGTTAGATCTAATAGAAAAGGAGAGGTTGGATTTCTTGCGGAGGACAGGAGGATCAACGTGGCAGTAACACGTGCCAGACGACAGCTTGTAGTGGTATGTGATTCCCAGACTGTCCGAAACCATGACTTTCTCAGGAGCTTGGTTGACTACATGTCTGAACACGGGGAGGTTCGCACTGCCTTCGAGTACCTAGAGGACCTGGTTCCTGAAAACTACCACCGCGATTTTAAAGACGAACAGAATAACATTAAAGCATCTTCcaccaaaacaaaggcaaaaaaCCAACAAGGCAAGAGAAATGAGACCAAGCACAATAAAATCTCTGAGAGCAAGAGCAAAGGAAACGGCCAATCAAAGGATGATCCCCACATCAGCAGTAACCTAAAGTCAAGCCTTCCCAAACCAAAAGCAGATGATCAAATTGAGTCTCAAATTAAGAAAGAGGAGATGAGGCAGCAGTTGCTTATCTTTCTGGACAACCAAAGTCAGACAGAGCTTCAGTTTCCTTCCTCTCTGAATTCACATGAACGCCTCCTAGTCCACCAACTCTGTGAAGAGCTGGAACTAAAGCATGTGAGCAAGGGAAGAAAACAGCGTCATATCACTGTTTCCAAACCAGTGGCAGAGCCAGAGGAGAGACTGGAAGAGGAATCAGTGTCCACAAGGCCAGAAATCCAGACTCCAGAGGAACTAACAGAAAAAGAATCCAACAGGCAACCACTAAAGCCTGCTCTAGATTTGAAAAGCTTGCATTTGGAGCGTATGCGCCGGGAGCAAGAAAAACGGGAGGAGAAAATTCAGAGCAAAAGACAGGAGACAGAGCATAAAGACAGCAAAGGCCCATCCACGAAAAAGAACAAAGGTGTAACAAAAGGAAAGGGGAAAATGAAAGCAGGGGCTGTGGACATTGCTGCAGCTGCTACAGCTGAGGATGATTTTGATGCACTCATTGATGCTGTGGTGAAAGCAGAAAGCGTGTGTGGCTTCATGAAGTGTAAAGCCAGTGTGCTCACACTGGGGCAGCTGTGTGTCTACTGTAACAGACAGTACTGCCTGAGTCACCACATACCTGAGGTCCATGGATGTGGAGACAAAGCGAAGGCGCAGGCTCGCATGAGAATAAGCAAAGAGGGAGTGCTGTATGCTGGAAGCGGGCAGAAGGACAAGTCCATGGATCCGAACAAAAAAGCATACCTGCAACGCAAACTAGACTCTAAACTCAAAGACATGGCATCCCAAAGAAAATCCAAGTCAAAGGATAAAGAACATTGAATATTTCAGTTCTGCtgtgtaaaaattaatttattctaaTTAAACGAATAAAGTGGTGGTTTGATCTA

Function

symbol description
ighmbp2 Predicted to enable 5'-3' DNA helicase activity. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Orthologous to human IGHMBP2 (immunoglobulin mu DNA binding protein 2).

NR:

description
DNA-binding protein SMUBP-2 isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19036 IGHMBP2; ATP-dependent RNA/DNA helicase IGHMBP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927815.2 True 3220 mRNA 0.47 17 14315835 14324438

Neighbor

gene id symbol gene type direction distance location
LOC113534338 NA coding downstream 21395 14289025 ~ 14294440 (-)
paqr5a paqr5,LOC108263988 coding downstream 39184 14266084 ~ 14276651 (-)
kif23 kif23,LOC107672274,LOC107686310 coding downstream 50572 14256547 ~ 14265263 (-)
aagab aagab coding downstream 354449 13956433 ~ 13961386 (-)
snapc5 snapc5,LOC107672220,LOC107596973,LOC107686356,LOC107583772 coding downstream 505842 13806984 ~ 13809993 (-)
bcl2l13 bcl2l13 coding upstream 42369 14366807 ~ 14384784 (-)
wnt2 wnt2,LOC107708232,LOC107738769,LOC107596948,LOC107660945 coding upstream 65461 14389899 ~ 14398268 (-)
asz1 asz1 coding upstream 77430 14401868 ~ 14422777 (-)
cttnbp2 cttnbp2 coding upstream 129899 14454337 ~ 14502230 (-)
synm synm coding upstream 196229 14520667 ~ 14529857 (-)
G99202 NA non-coding downstream 280294 14035267 ~ 14035541 (-)
G99187 smad3b,smad3,LOC108264458,LOC107738715,LOC108424035,LOC107686302,LOC107672260 non-coding downstream 365114 13950147 ~ 13950721 (-)
G99188 smad3,LOC108264458,LOC107686302,LOC108424035 non-coding downstream 368924 13944751 ~ 13946911 (-)
G99184 LOC101268919,LOC101159109 non-coding downstream 382901 13932553 ~ 13932934 (-)
G99166 NA non-coding downstream 471598 13843999 ~ 13844237 (-)
G99408 NA non-coding upstream 4489 14328927 ~ 14334134 (-)
G99401 wee2 non-coding upstream 25280 14349718 ~ 14355619 (-)
G99433 NA non-coding upstream 124418 14448856 ~ 14453107 (-)
LOC113534271 NA non-coding upstream 186486 14510924 ~ 14519784 (-)
G99453 NA non-coding upstream 209382 14533820 ~ 14536010 (-)
c6h15orf39 c4h15orf39 other downstream 753261 13550680 ~ 13562574 (-)
G98770 NA other downstream 1263524 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 1891857 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 1910554 12396507 ~ 12405281 (-)
admb NA other downstream 1970383 12311822 ~ 12345452 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 11498 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1022728 15347166 ~ 15357563 (-)
G101178 NA other upstream 3863009 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 5655631 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 6071428 20395866 ~ 20416574 (-)

Expression


Co-expression Network