cd81b (cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582)


Basic Information

Item Value
gene id cd81b
gene name cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18224061 ~ 18241609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026932801.2
TTCAAGTGGAGGTGCAGTTTAATTTTCAAATACATATGATCCAACTTCCTGCAGATTGTAGGCGGTCTCATCGTCGTAGTTTCGCTCTTATTATCTACTCGAGATCCGTGTATAACACAATCCATCCTGACGTCCTATCGTCCCTGTTCTGATAGGATAAACGACGCTCTTTCAGTTCGATTCAGAGCAACAGCCACATCGTGCCGTTTCAACTGAACCCAGACGCTCTCCACTATGGTCCTCACAGGCTGCTCTCAGTGCATTAAGTACACGCTCTTTTTCCTCAACTTCATGTTTTGGCTTGCTGGGGGTGTCATTTTGGTTTTGGCTTTGTGGCTTCGCTCAGACTCTCAGATCAGCAACCTGCTGATGGTTCAGTTTGAAGGTAGCCAAGCACCAGGAACCTTTTACATCAGTGTGTATATCCTGATAGCTGTTGGAGCTGTGATGATGTTTGTTGGATTCCTTGGTTGTTATGGTGCTATTCAAGAGTCTCAATGCCTTCTTGGAACAtttttcacatgtttagtgATATTGTTTGCCTGCGAGGTGGCAGCAGCAATATGGGGTTTCATCAGCAGAGACACGATCTCAGATGAGCTCATCAACTTTTATGATGCTGCCTATATGAAATCTGTGGATCCAGTAGAAACTCCCACCAGACAAGCGGCCTCAAAGGTTCTTCTGGCTTTCCATGGCACACTTGAATGCTGTGGTAAAGGGGATTATAATGAATTATTCTTGGCTGTTCGGTCCACCCTCTGTCCTAAAAAGCCAGTGGATTTGCTTGCTTCTCAGagTTGCCATATGAAGCTAAGGGATCTGTTCACTGAGAAACTCCATGTGATTGGTCTGGCTGCCCTTATAATTGCGCTAATCATgGTTTTTGAGATGATCTTCACCATGGTTCTCTGCTGTGCAATCCGTAATGCCACCCCAGCACATTAATCGGACAAACTGACAGTTCAAGGCTTTCACCGTACAAGACATGCTGGTGATACAGGAGAGAACATTCAACCATACTTTTTTACATACAATTtgctgttttaaattttttatatacgtacttttttttacaatcacATCTAACCTGATCTTTTGAAATTAAAAAGATGCAATTAATAATGTTCATAAATGAATAGCCATGTTAACCCGCAAATTCAGTGAGgtaaaaaataacatatttccacttattacacacattttatttaaaaaagaagtatgtctgaaaatacatgaaaattATAACATGTATGACAATAAGccaatgatttatttaaaataagtaatggtttttaaaatgtagcagTACTATTACTTACCAAAAGTTAAATGGctattttctttaatattagCAGTTCTTATCTGACCATATTTTCTAGGCAAGACAATATTGTTTAAAGGTGCTaaagtgtgatggtcatgtttgtctgcatgtatttgtgtttgcACTAGTTACTACATAAGATTTTATTGACCATTGAAAGCAGATGCCCAAATAAAGTCCAGCAATTCCAATAA

Function

symbol description
cd81b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in cerebellum; cleithrum; floor plate; and hindbrain. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human CD81 (CD81 molecule).

NR:

description
PREDICTED: CD81 antigen-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026932801.2 True 1521 mRNA 0.39 8 18224061 18241609

Neighbor

gene id symbol gene type direction distance location
reln reln coding upstream 35577 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 621887 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 682408 17530434 ~ 17541653 (+)
slc28a1 LOC108263923 coding upstream 845721 17363125 ~ 17378340 (+)
blm blm coding upstream 1158242 17041357 ~ 17065819 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 439908 18681517 ~ 18732814 (+)
zgc:162879 NA coding downstream 918377 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 1037541 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 1053883 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 1112517 19354126 ~ 19360323 (+)
G101183 NA non-coding upstream 18247 18205092 ~ 18205814 (+)
G100846 NA non-coding upstream 155492 17990402 ~ 18068569 (+)
G100544 NA non-coding upstream 1047691 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 1069090 17154706 ~ 17154971 (+)
G100532 NA non-coding upstream 1071829 17150953 ~ 17152232 (+)
LOC117597602 NA non-coding downstream 20114 18261723 ~ 18277823 (+)
LOC117597601 NA non-coding downstream 107515 18349124 ~ 18358091 (+)
G101387 NA non-coding downstream 295292 18536901 ~ 18537109 (+)
G101388 NA non-coding downstream 295977 18537586 ~ 18537809 (+)
LOC117597609 NA non-coding downstream 303563 18545172 ~ 18545666 (+)
LOC113539654 NA other upstream 730969 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 780593 17400426 ~ 17443468 (+)
rgma NA other upstream 1543268 16657601 ~ 16680793 (+)
G100345 NA other upstream 1622994 16600257 ~ 16601067 (+)
G100306 NA other upstream 1874274 16349457 ~ 16349787 (+)
G101403 NA other downstream 309837 18551446 ~ 18551724 (+)
G101419 NA other downstream 357105 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 496734 18738343 ~ 18739998 (+)
G101466 NA other downstream 552026 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 715819 18957428 ~ 19122497 (+)

Expression


Co-expression Network