kti12 (kti12,LOC107715238,LOC107725737,LOC107562123)


Basic Information

Item Value
gene id kti12
gene name kti12,LOC107715238,LOC107725737,LOC107562123
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17581883 ~ 17602174 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935202.2
GAGTTGGTATTGTGGAAAGTAAgggaagaaacagaaaagaggaGACAATCATGAATAGGACAGTATAGGCGTTAACTAACTCTTATAGCCAGAAGATGGCAGTAGTTCAACAGAAAcccgaagaagaagaagaagaagaagacccACCCATTTCTTAGCCAAAAAACATATTGCCCGAAATGCCCTTAATTATAATATGTGGCTTTCCTTGCAGCGGCAAAAGTCGCCGAGCTCACGAATTAAGAGATTACTTCGGCGAAAATACGGATAAACAAGTTGACATAATTGGAGATGAAATGCAGGGTATTGATAAGAACTCGGTGTATGCAGACCCACAGAAGGAGAAAAATTTGAGAGGTGCTTTGCGGTCTGAAGTTGAAAGGAAAATCAACAAAGATGATATTGTAATTCTGGATTCCTTGAATTACATTAAAGGTTACAGATATGAACTCTTTTGTCTCATCAAGCATGTACAGACACCACACTGTTTGGTCTACTGTTTGACATCGGCTGCATTGAGCTCTGAGTGGAACAAGGAAAGAGAAGCAGATTATCGATATTCCcaggaaatTCTGAATGCTCTAATTTTGAGATTTGAAGCCCCTGATTCAAGAAATAGGTGGGATAGTCCGCTCTTTACTATTCAGAAAGAGGACAGACTTCCATTTGAAGCTATCTCTGATGCCATTTTGAAAAGGAAAGTGCCACCACCTAACCAGTCTACACAAAGTCAACCACTATCTACCACCAACTTTTTATACGAACTGGACAGAGTTACTCAAGATGTCTTAATGGCTGTTCTTGACTCACAGAAAACCAGCATTCCTGGGGATGTTATTGCAATTCCAGGAGCTACAGAAAAAATTGATGTAACACGAAGCCTTAACATAGCTGAACTGAGGAAACTTCGGCGACAGTTCATCAGTTACACCAAGATGCACCCAACAGAGAACATTGGACAGATAGCCAATATGTTTGTGCAGTACCTCAACAAGAGTGTGCACTGATAGCTGCCTGTAAatttaacagcacattttagggttttttttcttcagtgttttaAGAGTTATAATTATTCATTGTtctgtttaacatgtttttgattatgaatttaataaaacgtgtatatatttttagagAACTTAGCATGTTACAactaaatgtgtttatgtatgtataaatgtatttatgctTGTAGACACCAACTGATAGAATTACTTTTCCACAGTACTAATTTCCAAATTCCATACTAAGTTCCAATTTGATGTCCAATGTGAGAGTCTTACATTCAAAGAATTCTGACTGAAGAATTCATACTAATCCTGGGATTTTATTAAAACCAAAGCTATTAAACCATTATTCCGTGGTGTTAAA

Function

symbol description
kti12 Predicted to enable ATP binding activity. Orthologous to human KTI12 (KTI12 chromatin associated homolog).

NR:

description
protein KTI12 homolog isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function

KEGG:

id description
K15456 KTI12; protein KTI12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935202.2 True 1374 mRNA 0.37 9 17581883 17602174

Neighbor

gene id symbol gene type direction distance location
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 40230 17530434 ~ 17541653 (+)
slc28a1 LOC108263923 coding upstream 203543 17363125 ~ 17378340 (+)
blm blm coding upstream 516064 17041357 ~ 17065819 (+)
ppp1r15b LOC108263894 coding upstream 597907 16978935 ~ 16983976 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 653241 16838875 ~ 16928642 (+)
reln reln coding downstream 159343 17761517 ~ 18188484 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding downstream 621887 18224061 ~ 18241609 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 1079343 18681517 ~ 18732814 (+)
zgc:162879 NA coding downstream 1557812 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 1676976 19279150 ~ 19283703 (+)
G100544 NA non-coding upstream 405513 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 426912 17154706 ~ 17154971 (+)
G100532 NA non-coding upstream 429651 17150953 ~ 17152232 (+)
G100495 NA non-coding upstream 491177 17087954 ~ 17090706 (+)
LOC117597540 NA non-coding upstream 542607 17038051 ~ 17039276 (+)
G100846 NA non-coding downstream 388228 17990402 ~ 18068569 (+)
G101183 NA non-coding downstream 602918 18205092 ~ 18205814 (+)
LOC117597602 NA non-coding downstream 659549 18261723 ~ 18277823 (+)
LOC117597601 NA non-coding downstream 746950 18349124 ~ 18358091 (+)
G101387 NA non-coding downstream 934727 18536901 ~ 18537109 (+)
LOC113539654 NA other upstream 88791 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 138415 17400426 ~ 17443468 (+)
rgma NA other upstream 901090 16657601 ~ 16680793 (+)
G100345 NA other upstream 980816 16600257 ~ 16601067 (+)
G100306 NA other upstream 1232096 16349457 ~ 16349787 (+)
G101403 NA other downstream 949272 18551446 ~ 18551724 (+)
G101419 NA other downstream 996540 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1136169 18738343 ~ 18739998 (+)
G101466 NA other downstream 1191461 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 1355254 18957428 ~ 19122497 (+)

Expression


Co-expression Network