slc28a1 (LOC108263923)


Basic Information

Item Value
gene id slc28a1
gene name LOC108263923
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17363125 ~ 17378340 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935420.2
TGTAGGCTTTCTTGCTTTAGAAAGGGAATAAACAATAAGAATTATTTCCCTGAATGTTAAGAAATTGCAGTTGTACTTTATTATGctgttattacattttattattggATGTTATGGTTAAGAGATTTTAAATTCAAACTTTCTCCTGCAGTGAATACTGATCACATAGAgttgaaaaatgtcattcaaAGTAATGGACATGGAGTGGACAATCCGGGATTTGAGGCCGAGGAGGAAACAATATCAGATCACAACAGTGAGATGGCACAGAAAGAATCAGGAAAAGAGTCCAAATCATCTATAAGCAAAATATTCAAACCAATCATGGCTACTGAAAACTTCTTGAAGGCTCACTCTCGAATCTTCAAATACATTGCCCTGGGGATACTTAGTGCAGGCTATGTGGCATACTTTGTTGCTGCCTGCTGGTTGAACTTCCAGAAAGCAATTGCTCTTGTTGTCCTTACCAGTGTAGCGGTGTTTTTCACATTGTATGATTTTGTGAAGAGGTCCAAGGGAGACACTATAAAACACTTCTTAAAGCCTGCTGTTAGATGCTTTAAAGCCAACATGAGGTGGATAAAATGGGTTTTTACATTAGTGGTGGTAGGACTGTTGGTGGCCTGGCTGGCAGTTGACACAAGGCAAAACCCTGAGCAGCTCATTTCATTTGGtggtgtctgtctctttatcctTGGCTTGTTCCTCTTCTCTGCAAAAAGATATGCAGTTCGTTGGAGGACAGTCCTCTGGGGGCTTGGTTTACAATTTGTCATGGGCCTGTTTGTCATAAGGACTGAGCCTGGTTTCATAGCTTTCAACTGGCTGGGAGCACAAATCCAGacatttttaaacTACACCCATGCTGGCTCATCTTTCGTGTTTGGCAGTCTGGTAGAATCAGGCATCTTTGCATTTCAGGCTTTGCCTATAGTGATATTTTTCAGCAGTATTATGTCAGTACTCTACTACCTTGGTGTGATGCAATGGATTATCATTAAGATTTCCTGGATTATGCAGATAACAATGGGAACATCTCCTACGGAATCGCTGAGTGTTGCAGGGAATATATTTGTTGGACAGACAGAAGCACCACTGCTGATTCGTCCCTATTTAAAAGACATGACCAAGTCTGAGATCCATGCTGTCATTGTTGGAGGTTTTGCCACAATCGCAGGCAGTGTGATGGgagctttcatttcatttgggATAGATGCATCCTCTTTGATTGCTGCCTCTGTAATGGCTGCTCCATGTGCATTGGCCATGTCCAAACTCTCATATCCTGAAACAGAAGAGAGCAAGTTTAAATCTGAAGACAATATCAAAGTAGAAGGCGGTGGTGAACAGAATATCCTGGAGGCTGCTTCTGCTGGAGCAGCTGCATCTGTCGGGCTTGTGGCTAACATAGCTGCCAACTTGATTGGATTTCTTGCCATTTTGGCTTTCATCAATGCAGCTCTGAGCTGGCTGGGAGGAATGGTGGGATATCCAGACATCACATTTGAGCTCATCTGCTCATATGTATTCATGCCTGTGGCCTTCATGATGGGCATACCATTTGATGAGTGCTTCATTGTGGCTGAACTTATTGGCACAAAACTGTTCCTCAATGAGTTCATAGCTTATGAGAAGCTGTCAAACCTGAAAAATAATCGATTAAATGGCATCACAGAAGTgggaaaatacatttcaGTCAGATCAGAAATCATCAGCACCTATGCTCTGTGTGGCTTTGCCAACTTCAGTTCACTTGGAATTGTGATTGGAGGCATGTCTTCCATTTGTCCTTCAAGAAAAAGTGACATTTCTGCTTTGGTGCTAAGAGCCTTGTTCACAGGCACTTGTGTGTCCCTGCTTAATGCGTCTATTGCTGgccttctttttcttcctcaacTAGATTGTAtagatgtgtttaaaaattcTGTCTTCAACACCACTGATACTAAAATCCAAACTTGCTGTTATGGCCTCTTTGAAAGTGCTGTGAAGAATGAAACAGTGATTTCTTTCGAGGGATCTTGGAGCATGGTGAAAAATGCCACTCTTTATTTCACAGAGTGCTGCCATCTTTATAATGAAACTGTCTGCATTTAGGAATTCTGCATTGTTTTTGCGTAGCACATTGTATTTGTAAGTTAATTCTTTATCATTTTCTCTTATATGTAGATATAAAACAACATATATTTTGGCTGTATCATAATAGTTAAAGTGTTGTTTGTATTGGagtattgtttaaataaaaagttatttaatcAGTAAGCTTTATAATAAAGTATTAGGGCTGCCACTGAactcaaacaaaattatttttatgttggctataaacattttgattttCTCAAAATGGCATAGCCATTGCATAGCCAGCCATGGAATAACCATAACTATTGGATAGGAGGGATTGGAGGGAGACCATAACTAGTGGTTAAGAGGGATGATGTTCTCTTAATTgccaatcagagcaacactatccaattgtgggcatctgtgagcacacatatgtatgtggaagaggccAAGTTTCCTCCAAGTAGAAATGCACAATggaccacctttttttttttgcttattcaATGCCACTTCTGTTCACTCTCAAATAATTctgatatttatatatcagATAATAATGAACACTTCTAGCATTTTGTGTGTTCAACTGTCCTGTAATGTAGCATAAGCAGCAGATTGAAAAGATTCTGTGGTTGGTTTCACACGTCTCGTAGGATGCAAATGTTAGCCTTTACCACCCTCCCCATGTGGTAGCTGTGGGAAAACCAGATTGGGCAAATGACCAGTTTGAGAGAAAGTGGTGTAAAAAAAACGGGGGGTTGGGGGGCTTATCTGATTATGTGTCAGGCTCAGTAGACTGAAgttagatttaaaaatgttaataaagttACTgttaaactataaaa
>XM_026935421.2
CATTTGTCACTCATTCGAAGAGGAAGCAGAATGATGAATACTGATCACATAGAgttgaaaaatgtcattcaaAGTAATGGACATGGAGTGGACAATCCGGGATTTGAGGCCGAGGAGGAAACAATATCAGATCACAACAGTGAGATGGCACAGAAAGAATCAGGAAAAGAGTCCAAATCATCTATAAGCAAAATATTCAAACCAATCATGGCTACTGAAAACTTCTTGAAGGCTCACTCTCGAATCTTCAAATACATTGCCCTGGGGATACTTAGTGCAGGCTATGTGGCATACTTTGTTGCTGCCTGCTGGTTGAACTTCCAGAAAGCAATTGCTCTTGTTGTCCTTACCAGTGTAGCGGTGTTTTTCACATTGTATGATTTTGTGAAGAGGTCCAAGGGAGACACTATAAAACACTTCTTAAAGCCTGCTGTTAGATGCTTTAAAGCCAACATGAGGTGGATAAAATGGGTTTTTACATTAGTGGTGGTAGGACTGTTGGTGGCCTGGCTGGCAGTTGACACAAGGCAAAACCCTGAGCAGCTCATTTCATTTGGtggtgtctgtctctttatcctTGGCTTGTTCCTCTTCTCTGCAAAAAGATATGCAGTTCGTTGGAGGACAGTCCTCTGGGGGCTTGGTTTACAATTTGTCATGGGCCTGTTTGTCATAAGGACTGAGCCTGGTTTCATAGCTTTCAACTGGCTGGGAGCACAAATCCAGacatttttaaacTACACCCATGCTGGCTCATCTTTCGTGTTTGGCAGTCTGGTAGAATCAGGCATCTTTGCATTTCAGGCTTTGCCTATAGTGATATTTTTCAGCAGTATTATGTCAGTACTCTACTACCTTGGTGTGATGCAATGGATTATCATTAAGATTTCCTGGATTATGCAGATAACAATGGGAACATCTCCTACGGAATCGCTGAGTGTTGCAGGGAATATATTTGTTGGACAGACAGAAGCACCACTGCTGATTCGTCCCTATTTAAAAGACATGACCAAGTCTGAGATCCATGCTGTCATTGTTGGAGGTTTTGCCACAATCGCAGGCAGTGTGATGGgagctttcatttcatttgggATAGATGCATCCTCTTTGATTGCTGCCTCTGTAATGGCTGCTCCATGTGCATTGGCCATGTCCAAACTCTCATATCCTGAAACAGAAGAGAGCAAGTTTAAATCTGAAGACAATATCAAAGTAGAAGGCGGTGGTGAACAGAATATCCTGGAGGCTGCTTCTGCTGGAGCAGCTGCATCTGTCGGGCTTGTGGCTAACATAGCTGCCAACTTGATTGGATTTCTTGCCATTTTGGCTTTCATCAATGCAGCTCTGAGCTGGCTGGGAGGAATGGTGGGATATCCAGACATCACATTTGAGCTCATCTGCTCATATGTATTCATGCCTGTGGCCTTCATGATGGGCATACCATTTGATGAGTGCTTCATTGTGGCTGAACTTATTGGCACAAAACTGTTCCTCAATGAGTTCATAGCTTATGAGAAGCTGTCAAACCTGAAAAATAATCGATTAAATGGCATCACAGAAGTgggaaaatacatttcaGTCAGATCAGAAATCATCAGCACCTATGCTCTGTGTGGCTTTGCCAACTTCAGTTCACTTGGAATTGTGATTGGAGGCATGTCTTCCATTTGTCCTTCAAGAAAAAGTGACATTTCTGCTTTGGTGCTAAGAGCCTTGTTCACAGGCACTTGTGTGTCCCTGCTTAATGCGTCTATTGCTGgccttctttttcttcctcaacTAGATTGTAtagatgtgtttaaaaattcTGTCTTCAACACCACTGATACTAAAATCCAAACTTGCTGTTATGGCCTCTTTGAAAGTGCTGTGAAGAATGAAACAGTGATTTCTTTCGAGGGATCTTGGAGCATGGTGAAAAATGCCACTCTTTATTTCACAGAGTGCTGCCATCTTTATAATGAAACTGTCTGCATTTAGGAATTCTGCATTGTTTTTGCGTAGCACATTGTATTTGTAAGTTAATTCTTTATCATTTTCTCTTATATGTAGATATAAAACAACATATATTTTGGCTGTATCATAATAGTTAAAGTGTTGTTTGTATTGGagtattgtttaaataaaaagttatttaatcAGTAAGCTTTATAATAAAGTATTAGGGCTGCCACTGAactcaaacaaaattatttttatgttggctataaacattttgattttCTCAAAATGGCATAGCCATTGCATAGCCAGCCATGGAATAACCATAACTATTGGATAGGAGGGATTGGAGGGAGACCATAACTAGTGGTTAAGAGGGATGATGTTCTCTTAATTgccaatcagagcaacactatccaattgtgggcatctgtgagcacacatatgtatgtggaagaggccAAGTTTCCTCCAAGTAGAAATGCACAATggaccacctttttttttttgcttattcaATGCCACTTCTGTTCACTCTCAAATAATTctgatatttatatatcagATAATAATGAACACTTCTAGCATTTTGTGTGTTCAACTGTCCTGTAATGTAGCATAAGCAGCAGATTGAAAAGATTCTGTGGTTGGTTTCACACGTCTCGTAGGATGCAAATGTTAGCCTTTACCACCCTCCCCATGTGGTAGCTGTGGGAAAACCAGATTGGGCAAATGACCAGTTTGAGAGAAAGTGGTGTAAAAAAAACGGGGGGTTGGGGGGCTTATCTGATTATGTGTCAGGCTCAGTAGACTGAAgttagatttaaaaatgttaataaagttACTgttaaactataaaa

Function

NR:

description
sodium/nucleoside cotransporter 2-like isoform X3

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935420.2 True 2918 mRNA 0.40 17 17363188 17378340
XM_026935421.2 False 2801 mRNA 0.40 18 17363125 17378340

Neighbor

gene id symbol gene type direction distance location
blm blm coding upstream 297306 17041357 ~ 17065819 (+)
ppp1r15b LOC108263894 coding upstream 379149 16978935 ~ 16983976 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 434483 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 546853 16764695 ~ 16816272 (+)
LOC113534621 NA coding upstream 852146 16500760 ~ 16510979 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 152094 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 203543 17581883 ~ 17602174 (+)
reln reln coding downstream 383177 17761517 ~ 18188484 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding downstream 845721 18224061 ~ 18241609 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 1303177 18681517 ~ 18732814 (+)
G100544 NA non-coding upstream 186755 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 208154 17154706 ~ 17154971 (+)
G100532 NA non-coding upstream 210893 17150953 ~ 17152232 (+)
G100495 NA non-coding upstream 272419 17087954 ~ 17090706 (+)
LOC117597540 NA non-coding upstream 323849 17038051 ~ 17039276 (+)
G100846 NA non-coding downstream 612062 17990402 ~ 18068569 (+)
G101183 NA non-coding downstream 826752 18205092 ~ 18205814 (+)
LOC117597602 NA non-coding downstream 883383 18261723 ~ 18277823 (+)
LOC117597601 NA non-coding downstream 970784 18349124 ~ 18358091 (+)
G101387 NA non-coding downstream 1158561 18536901 ~ 18537109 (+)
rgma NA other upstream 682332 16657601 ~ 16680793 (+)
G100345 NA other upstream 762058 16600257 ~ 16601067 (+)
G100306 NA other upstream 1013338 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 2016979 15300482 ~ 15346146 (+)
G99341 synm other upstream 2838645 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 22086 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 111206 17489546 ~ 17493092 (+)
G101403 NA other downstream 1173106 18551446 ~ 18551724 (+)
G101419 NA other downstream 1220374 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1360003 18738343 ~ 18739998 (+)

Expression


Co-expression Network