ppp1r15b (LOC108263894)


Basic Information

Item Value
gene id ppp1r15b
gene name LOC108263894
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16978935 ~ 16983976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935710.2
GAAAGCTCCGCCAGGGAGGATTATCAGAACACCTGACCATTTTTCGCTGCGTGCTGTGTGGAGAAGATGGAAAGCGTGTGTGGAAATGCGAGAGAGCGAAGCGCGATGCAGCGCGTCAGCCACAGCGGCATGGCGCTTTTACCGTGGACCAGACAGATCCTGACAGTACTATGGGAAAACGTCCGCTTAATGCTTCAAGTCATCTGTTGCAGCTTAATGGCAGTTTTCCAGATGTTCAGGTTTGAAGTTCACCTGCGCATCACAGATGACACAGGAGAACATATTCAACACATGACGAATGGCCATGGAGATACCGAAGGTTTTCTCCTGTCATCACTGTTTGAAAGCAACAAGAATGTTGTAGTGGCAGGTCCGAGTCCTCTGTCAAGGTTTAACAAGGATCCTTTCAACCTAAACTCACATTCCAGGTCTGTTCTATCCAGTCTTGTGAATGATGATCTCTGCTGCTCACTGGTGGACAATTTAGTATCCTGTGCAACTGAGTGTCTCAATGATaatgaagatgtgtgtgtaggagagcAGTTTGGCTGGAAGCACAGATTTGACTGGAATTTTCATACAGGCTTAGAGAGTAGAGTAGATGAAGAATGTGTATCGAGTCTTTATGAGAAGGATGTTCAGAAACAGAATGATTGTTGTACAGGATTGGAATGTAATTTTTCAAGGTTAAAGTTCAAAAGTCAAAGTTCAGATAGCGAGTTCAGCTGGGGCAGCTCAGACAGTTCCTCCATAGATAGGGAGCGAGAGGATAGCGATGGGCTCTGGGATCTTCTTAGGTGTTCCAACGATCCATACCACCCACTGCACTTCACAGCATGTATGTCCAGTGCAGTTGCTAATAGACAGAGAACACAAACAGGATCAAGTCAGCAAAGAAATGAATTCACATCAACACCATCTAGTGTGTCCTGTTGCTCAGATTCTAGTGAGCAAGGAAACACTGGAACTGTCAACTCGGAAGACGAAGAGGAGGCATTGTGGAAGTCTCTGTCTCGGGATGACGACCCTTATCACCCATTGAATTTTAGAGCTCCTCTCAACAGTTCACATGCATTTACAGACTCCCATGAGAAAAGCCCTAAAACATCCAGAGACCCCAAAAGCACTAGATTTCCCAAGCCATTTTTGATGCAAAGGCAAGTTGTCAGTCACCGGTGTCCTCAGTTGTGTGTGGAGAAGCCAGCTAAAGTGCCCTGGAAAAGGCCCAAAAATAAGACTGTTGATGCCACCATGACAAAGAAAATTTCTACTGTGAAacagGTGAAATTCTCTCCAGTTGTACAAATTCACAAGATGAGAGCCTGGTCGTTTGCTCTTCAAGCGTGCCGTAAGGGGCCATGGGAGGAGCATGCTCGGGATAGGGACCGTTTCCAGAGGAGAATTTTGGAAACAGAGCAGGCCATTGGATATTGTTTGATGCGATCTCACAGAGATAAGTTTTTGATCTATCACCAAAGCACCCTACCTAAATAAGCATATTCCAGGAAGACTTTCTAAGCTTAACTGAAACCCTGGACTGGTTCTGTTAACAACTCTGCTGTGTTGTGCACACAGTTTTCAAGCTCAAATCTGTTAACAAGTCTACATATATTCTTTACAGTGCCTTATAGACTAGTAATGAAAATGACAATGTGACAGCTATCTTACCATAAATGTAGGTGGCATATATGGTAGAGGCCGTTGTTTTTAAGTGATGAGGAtacaaaatgtttctgtttctacACTCTATATTTTTGGCTATTTTGAGAAACTGCCTtctgtattttgtattaatatGGTTTCTTGTTTTTGTCAGAGAATTTAGTAACCCTGTAAGAAGAGTGTGTCTAAGAGAGGGGTTTAAAAACAATGCATGATGAAACTCACTCCCCTGAGAAGAAATCAATTAGCTTCTCCCCTTGACACACCATTGGATGCACAAACTGCATGGTGCAAAGAGGAGCAATAATGTAGGCAATCTTTAACAAACATTATCACAGCAGATCTTTTTCCTTTGTGCAAAAGTTGTAAGTTCTCCCTGCTGCACACACTTTTGTTAGCAAGCAGGCTTTATGGGGGGGAGGGGGAATCAGTTTTCCCATTGCTTACCCGGCTATAACACAGTCTGTCATTGTTGTGTAATTGTAACTGACACAGCTAGAGATCCagttacatttgtgtgtgtgtgtgtgtgtgtgtatactactGAGTCTCACGCCATCTCTACTGATGCTGTAGTGTATCTGGTTGCCAGGCAACAAAGAGAGCTGTGCTTGGTGGCTCTGAAAGTATTACAGGAGATTGCAGCAGGAAGAGTGCATTGTGGGAGGGTAGCCAGCATGGTCATGATAGAGAATGGTGAAGCTAAGAAGGTGGGAGTGGATGTGACTGGATCTCTGGAGTCTCAATTACACTGTTCAGACTGTCTGATGCAATCAGCAGCCTTTGTGAGTTAAACACAAAAGGTAGCATAGGCAAGCTCAAATAGTCCCATAGGGTATCTTCCCACTTTCTTTTGGTGAAATGTTCCACACTCCTGTTATGCTCTAATCAAGCTCAAACTTATAGAAAATGCTAAGTTTGTTGTTAAATTGTGTTATTTCTGTAAAAGTTTGATCAAAATCAGTTTAAATATTCAGCATATAATGTCTATGAAGGTTCTTAATTCAGGTCACTTTGCACTGTCTGTTTGATAGCATGTCTTGAAGATATTTTGTCACTCATTCAAGGAAAAACCAATGAAATCCCTCAGATGAGTGGAAAACCTGCTCCCGATCTACCCTGACT

Function

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 15A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935710.2 True 2787 mRNA 0.43 3 16978935 16983976

Neighbor

gene id symbol gene type direction distance location
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 50293 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 162663 16764695 ~ 16816272 (+)
LOC113534621 NA coding upstream 467956 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 718762 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 1122823 15812514 ~ 15856112 (+)
blm blm coding downstream 57381 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 379149 17363125 ~ 17378340 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 546458 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 597907 17581883 ~ 17602174 (+)
reln reln coding downstream 777541 17761517 ~ 18188484 (+)
G100480 NA non-coding upstream 6697 16971830 ~ 16972238 (+)
G100379 NA non-coding upstream 39207 16938735 ~ 16939728 (+)
G100370 NA non-coding upstream 155833 16822368 ~ 16823102 (+)
G100362 NA non-coding upstream 218401 16760311 ~ 16760534 (+)
G100360 NA non-coding upstream 220592 16758139 ~ 16758343 (+)
G100499 NA non-coding downstream 26739 17010715 ~ 17024228 (+)
LOC117597540 NA non-coding downstream 54075 17038051 ~ 17039276 (+)
G100495 NA non-coding downstream 103978 17087954 ~ 17090706 (+)
G100532 NA non-coding downstream 166977 17150953 ~ 17152232 (+)
G100533 NA non-coding downstream 170730 17154706 ~ 17154971 (+)
rgma NA other upstream 298142 16657601 ~ 16680793 (+)
G100345 NA other upstream 377868 16600257 ~ 16601067 (+)
G100306 NA other upstream 629148 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1632789 15300482 ~ 15346146 (+)
G99341 synm other upstream 2454455 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 416450 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 505570 17489546 ~ 17493092 (+)
G101403 NA other downstream 1567470 18551446 ~ 18551724 (+)
G101419 NA other downstream 1614738 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1754367 18738343 ~ 18739998 (+)

Expression


Co-expression Network