cd151l (LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929)


Basic Information

Item Value
gene id cd151l
gene name LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30272544 ~ 30285534 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304955.1
TTGTCCGGGTCGGGGTGGGGCTCTGCAGAGCTGCATACCTGGACcaagaagaaagaacaaatCTGCTGTGTTTAACTCAGTGAAAGTGTCTAAATctttaaatcatttcttttcaaATCTTTTCCGAAGAAAGTTAAGATTAATTCTGTTAGTAAAAGCGTGTAACTCCGGGGATTTATTGTGTCTGAGGTTCATCAGTGCAGCTGCTGCTTCATCTCACTATTTACAgAATGGGAGCAAACGCAGAAAAGAAGGACAGATGTGGGACCGTGTGCCTGAAATACCTCCTGTTCACCTTTAACTTCCTGTTttggCTGGCAGGGGGCGCCGTGATGGCTGTAGGATTGTGGACACTGGTGAAGAAGAGCGACTACATCAGCCTGCTCTCCTCCAGGATCTACGCCGTGTCGGCCTACATCCTCTGCCTGGCCGGGGTCATCGTCATGGTAACGGGGGTTCTGGGCTGCTGCGCCACCTTTAAGGAGAAAAGACGACTTCTGAGAGTGTATTTCGTCCTGCTGATGTGCATCTTTCTTCTGGAGATCCTGGCTGGAGTTCTGGCCTACATCTACTACCAGCAGCTGAGCGACGAGCTGAAGAGTAATCTGAAGAACACGATGGTGAATAAATATAAGCAGCCGGAACAGGACCACGTCACACAGGCTGTGGATAAATTACAgcaagaaTTTAAATGCTGCGGCAGCCACAACTCGTCTGATTGGATGGAGAGCGTTTGGGTCCGCACCAGCGAGTCCGGTAAGCGAGTGGTACCAGACAGCTGCTGTAAGACGCCCATGGAGCTGTGTGGACAACGAGATCATCCCTCTAACATTTACAAAGTGGAGGGCGGCTGCATTGCTAAGCTGGAGAACTTCATTATGGACCACTTAAAGCTGATTGGTGCTGTGggagtgggtgtggcctgtgtacAGatcgTGGGGATGATTTTCACATGCTGCCTCTACAGGAGTTTGAAAGCAGAGCCGTACTAAACTGTCGTCCTAAAAATCACGCTTTTACGCTTTAGTCTAACGTACCAAACGTTCTCACACACCGAGACGACAGACGGAGGTTTGTGCTTGTGAGTGTTTTTGCGCTGCCTCGGGAACAGGAAGTGCCTGTTAATGAAGAGAATCAGAGCGTGATAAGAGTGTACACTTGAAATTGTTGAACTAACTTTAAATAACGGACGATTATATTTAACGTAACGATGTCCTGCGTAACCTGTAGCTCATCTGAGTGCCTTTTAATGAAATAAGGAATTTCATTAACCCTGTAATGACTGACTACTGTTTTATAAACGATATCCAATATACTGgatatttattctttataattTATACTGTTTTGTCGTTTTCTTCCTGATTGTTTTGACGTCTGAGCATTTCGAGTCCTGGTTTATCATCAAGTCAACAAGTGTTGTATGATGTGTtacaattagtttttttttttatttgctgtttttaattgGCGTTAAGTCTGAGTTAGGAGTTTTTCTTAATCATGAACGTGTAGCAAATCACCATTGTTATCatgttataatgtaataataggCAGGAAATGTAATTTTGTATTAAATCCTGACCTGACACCAGA
>XM_034304956.1
TTGTCCGGGTCGGGGTGGGGCTCTGCAGAGCTGCATACCTGGACcaagaagaaagaacaaatCTGCTGTGTTTAACTCAGTGAAAGTGTCTAAATctttaaatcatttcttttcaaATCTTTTCCGAAGAAAGTTAAGATTAATTCTGTTAGTAAAAGCGTGTAACTCCGGGGATTTATTGTGTCTGAGGTTCATCAGTGCAGCTGCTGCTTCATCTCACTATTTACAgTGTCTTTCAGAATGGGAGCAAACGCAGAAAAGAAGGACAGATGTGGGACCGTGTGCCTGAAATACCTCCTGTTCACCTTTAACTTCCTGTTttggCTGGCAGGGGGCGCCGTGATGGCTGTAGGATTGTGGACACTGGTGAAGAAGAGCGACTACATCAGCCTGCTCTCCTCCAGGATCTACGCCGTGTCGGCCTACATCCTCTGCCTGGCCGGGGTCATCGTCATGGTAACGGGGGTTCTGGGCTGCTGCGCCACCTTTAAGGAGAAAAGACGACTTCTGAGAGTGTATTTCGTCCTGCTGATGTGCATCTTTCTTCTGGAGATCCTGGCTGGAGTTCTGGCCTACATCTACTACCAGCAGCTGAGCGACGAGCTGAAGAGTAATCTGAAGAACACGATGGTGAATAAATATAAGCAGCCGGAACAGGACCACGTCACACAGGCTGTGGATAAATTACAgcaagaaTTTAAATGCTGCGGCAGCCACAACTCGTCTGATTGGATGGAGAGCGTTTGGGTCCGCACCAGCGAGTCCGGTAAGCGAGTGGTACCAGACAGCTGCTGTAAGACGCCCATGGAGCTGTGTGGACAACGAGATCATCCCTCTAACATTTACAAAGTGGAGGGCGGCTGCATTGCTAAGCTGGAGAACTTCATTATGGACCACTTAAAGCTGATTGGTGCTGTGggagtgggtgtggcctgtgtacAGatcgTGGGGATGATTTTCACATGCTGCCTCTACAGGAGTTTGAAAGCAGAGCCGTACTAAACTGTCGTCCTAAAAATCACGCTTTTACGCTTTAGTCTAACGTACCAAACGTTCTCACACACCGAGACGACAGACGGAGGTTTGTGCTTGTGAGTGTTTTTGCGCTGCCTCGGGAACAGGAAGTGCCTGTTAATGAAGAGAATCAGAGCGTGATAAGAGTGTACACTTGAAATTGTTGAACTAACTTTAAATAACGGACGATTATATTTAACGTAACGATGTCCTGCGTAACCTGTAGCTCATCTGAGTGCCTTTTAATGAAATAAGGAATTTCATTAACCCTGTAATGACTGACTACTGTTTTATAAACGATATCCAATATACTGgatatttattctttataattTATACTGTTTTGTCGTTTTCTTCCTGATTGTTTTGACGTCTGAGCATTTCGAGTCCTGGTTTATCATCAAGTCAACAAGTGTTGTATGATGTGTtacaattagtttttttttttatttgctgtttttaattgGCGTTAAGTCTGAGTTAGGAGTTTTTCTTAATCATGAACGTGTAGCAAATCACCATTGTTATCatgttataatgtaataataggCAGGAAATGTAATTTTGTATTAAATCCTGACCTGACACCAGA

Function

NR:

description
PREDICTED: CD151 antigen-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06537 CD151, TSPAN24; CD151 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304955.1 False 1596 mRNA 0.44 8 30272544 30285534
XM_034304956.1 True 1606 mRNA 0.44 8 30272544 30285534

Neighbor

gene id symbol gene type direction distance location
taldo1 taldo1,LOC107711369,LOC107599753 coding upstream 6983 30258068 ~ 30265561 (+)
ddb1 ddb1 coding upstream 146322 30106693 ~ 30126222 (+)
iqcg NA coding upstream 548477 29716593 ~ 29724067 (+)
LOC117597519 NA coding upstream 722248 29520447 ~ 29550296 (+)
si:ch73-103b9.2 c4h16orf46 coding upstream 1494527 28774321 ~ 28778017 (+)
LOC117597588 NA coding downstream 19098 30304632 ~ 30305794 (+)
b4galnt3b NA coding downstream 25699 30311233 ~ 30353488 (+)
c2cd5 c2cd5,LOC107686569 coding downstream 80085 30365619 ~ 30408560 (+)
LOC117597544 NA coding downstream 93169 30378703 ~ 30379745 (+)
lmf2a lmf2,LOC108437435 coding downstream 125132 30410666 ~ 30426455 (+)
G107223 NA non-coding upstream 208106 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 301451 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 349472 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 582728 29685374 ~ 29689816 (+)
G107075 NA non-coding upstream 790080 29482234 ~ 29482464 (+)
G107387 NA non-coding downstream 76056 30361590 ~ 30429223 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 167322 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 272089 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 443300 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 542542 30828076 ~ 30829663 (+)
cmc2 cmc2,LOC107711752 other upstream 1468472 28799464 ~ 28804072 (+)
def8 def8 other upstream 2110675 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2201859 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2306236 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2727018 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 108726 30394260 ~ 30498315 (+)

Expression


Co-expression Network