foxg1c


Basic Information

Item Value
gene id foxg1c
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20470360 ~ 20471089 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304978.1
TGAAAAGCAGGGGGCGGGACAGAATGACATTGTGCCGGGGCTGATGAGGTTCAGAAGTGTTAAAGTCCAGCTTCAGGGTCTGTTCATCAGTCGGAGAGACGCAGTAGCACAGAGACGCATGACTCGGGTTTCACATTTCTGTGCCggtgttaatgtttttttgtgtgttttttctgtaagCAGTGTGGAAAAGTTtctccggtgtgtgtgtgtgtgtgtgtgcgcgcgcgctgTAATGTTGGAGGAGCTGAATTCCGCAGGTCGAGTTTTCCACACGTCCTCCTGCTTCAGCATCATCAGTCCGCTGCTGCGGCGCGACAGAGACGTGATTAGAGCCGCTGCAGGAGCGCGCGGCGGACACCAGGCGAGCGCGCGCGGCgaagacagagacagacggAGCGAGGGAGCGGTGAAGGAGGAGAAACCTCCGTTCAGCTACAGCGCGCTCATTATGATGGCGATTCTGCGGAGTCCTCAGCGCAGCCTCACGCTTAGCAGCATTTATGACTTTATCACAGAAAACTTTCCGTACTACCGGAACCGGAACCGGCGCAGCTGGCAGAACTCCATCCGCCACAACCTGAGCCTGAACCGGAGCTTCATCAAAGTGCCGCGGCGCTCCGATGACCCGGGGAAAGGCAGCTACTGGACGCTCGATCCGTCTGGCGGTGACGATTTCTTCATCAGCGGCACCGGCGCGCGCAAACTGCGgcagcggcggcggcggcgc

Function

NR:

description
forkhead box protein G1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304978.1 True 730 mRNA 0.58 1 20470360 20471089

Neighbor

gene id symbol gene type direction distance location
snrpd2 snrpd2,SNRPD2,LOC106612977,LOC106603799 coding downstream 5675 20460343 ~ 20464685 (-)
vaspb vasp coding downstream 17213 20422273 ~ 20453147 (-)
ccnp NA coding downstream 80727 20382810 ~ 20389633 (-)
si:ch211-132b12.7 NA coding downstream 93028 20362330 ~ 20377332 (-)
nectin1b nectin1 coding downstream 178037 20215142 ~ 20292323 (-)
pglyrp5 LOC108264553 coding upstream 2090 20473179 ~ 20476270 (-)
polr2i polr2i,rpb9 coding upstream 9737 20480826 ~ 20484801 (-)
rasa2 rasa2,LOC108264552 coding upstream 18451 20489540 ~ 20536022 (-)
zbtb38 LOC108264297 coding upstream 70554 20541643 ~ 20564081 (-)
fbxo36a NA coding upstream 95651 20566740 ~ 20572429 (-)
G102434 NA non-coding downstream 110819 20358215 ~ 20359541 (-)
G102272 NA non-coding downstream 113763 20282185 ~ 20356597 (-)
G102270 NA non-coding downstream 179369 20244335 ~ 20290991 (-)
G102271 NA non-coding downstream 207220 20257332 ~ 20263140 (-)
G102225 NA non-coding downstream 376558 20092984 ~ 20093802 (-)
G102444 NA non-coding upstream 782 20471871 ~ 20472745 (-)
G102449 NA non-coding upstream 7244 20478333 ~ 20478556 (-)
G102453 NA non-coding upstream 23168 20494257 ~ 20496301 (-)
G102472 NA non-coding upstream 107601 20578690 ~ 20581168 (-)
G102458 NA non-coding upstream 167782 20638871 ~ 20686185 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 53786 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 490101 19980069 ~ 19980259 (-)
G101178 NA other downstream 2273554 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 5112797 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 6123352 14335936 ~ 14347008 (-)
G102566 NA other upstream 482513 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 524252 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 1760359 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3119856 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 3177595 23648684 ~ 23699707 (-)

Expression


Co-expression Network