LOC113526346 (wdr49,LOC108264614)


Basic Information

Item Value
gene id LOC113526346
gene name wdr49,LOC108264614
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21689428 ~ 21733571 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304980.1
CTCGCTCCCTTGTTGCCTGGAGACCTGGACGGGCTTTAAAAGAGAGGGATCATAAAAGAAAagtgttgtgtagttgtgtgtatgtgtgtgtgtgtgtgtgtgtttggatttaCCACCAACAGCGCTACAACTGGTGGCTGCTTCTCTTGCTCTTTGAGgactttttctgtctgtttcttagAACTGTACTTAGCGTTGTGAAAATTTAAAGGAGTTTATATTCCCATCTGCCCAAcactcaaacttttttttgagCTTCATCGCTAAAGATCCTTGCGAGAAGCTTTCATTTCCTGGACCCACTTCACACAAAGAGTGATAGGAGTCGCATGATTGTGTCCTCTGGGCCTTGATTGACAGCtgaaaccatggcaacagtGAGGGAGGTGGAGCTGCTTGAGAGTCGACTGAGCATAGAGGACTTCATCAAGATGCAGAGTCTGTTTCAGtcatGTAATGGCTCTGGTGATTCAGTGCCCATGCAGCGGGAGGAGTTTATAGACCAGTTCTACTCCGTGATTGGCCGTGGCTCACGGGAAGAATATGAGCGTTTATTTGACAGTGTGGACGTGTCCAGGGAGGGCTGGGTGGACTGGCATCACCTAGCATCTTACCTTCTTCTGGGACTTTCAGAGAAACAAGAGCAAGCTACAATGTCTGCAGTGCCACGCTGGTGCCCGCCTCGCCTTCTACCTACCCCTCACAGAGGGCAAATCCAGAGCCTGCTAGACCTGGGCAATGGCCGCTACCTGAGTGTGAGTAAAGAGGGCATGATGGCTGTGTGGGCTGAGAATCTAACACTGCTCAAGAGCCACAAGCTCCACAATGATTCAGTCAAACCCAAAGATCTCTGGGTTACGGGTATGGTGGTGCTGCCCAACGTCCACAAGCTCGCCGTTTCCTTCACCAGTAAGGAGATATGCTTTTATGATCTGCTCTCTAAGCAAGAGTTCAGCTGTCAGTATAAAATTCATAGCCTGCGTCACACTCCCATCTGCCTCCATTACTGGCATCATCCTGAGAGACCTGAACATGCCGTGCTCAGCTTCGGAGATGTAGCAGGACAGgtgaaTGCGATGTGTTTTAGGTCAGCAGTGATCTCTCTGTTCGAGAAGCCAAGTGCAGGTGTTGAAAAAAATGCTGCCATCAATATCAGGTGGAGCGAGTTACAGCAGAACCGCCATCGCTGCTGTtacactgtcacacacagcGCACATGCAACACACTGGGTCACGAGCGtACGTTTCCTCGGCACACTGGAAGCCTTTGTCTCCTGCAGTGGTTCTGCTCAGAGCAGCATGGTGCTGGcatggagagaaacagaggcCCGTCCTCTCCGAATCACAGCTTTTCATATAGAGAAGGGAATAATGGATCTGGACTATCATCCAGGACTCAACCTCATTGCTACTGCAGGTCTGAATAACCAGGTGTGTCTCTGGAACCCTTACCTGGTCTCTAAACCTGTTGGCATCCTTCAAGGTCATGTTACCAGCGTAGTGGCAGTTCAATTCATGCTAGCAAAAAAACAGCTGATTAGCTTCTCTAAAGACAAGGTCTTAAGGGTGTGGGATGTGTCCACTCAACTGTGTGTCCAGCATGTGGCGGGACTCTTCCCTAAAGCTCAGGAGTGTAAAATGCTCCTATTCTTCCATGAGGAGCGATCACGCCTCTTTCtgtcctttaacagcacattgTTCTTCCTCGAGGCACAGAAGGAGGATAGAAAGAGAGTGATGAGTCACGAGAGCACGGTCACCTGCGTCCTCTACAACTCTCTCTTTAGACAGGTTATCAGCAGTGACGCAAACTCCAGTGTGAAGATTTGGCTCATGGACACTGGACAGAAGGTCAAGCACTTTccctgttgccatggtgacgcTGAGATCACCACCATGGCACTGGACGCAACTCAGACAAGGCTCTTCACTGCCGGCACGGATGGAGCtgtaaagGTGTGGGATTTCAATGGCCACTGTCACCACAGACTGAACGCATGCCGAGACCTGACAGTGGAAATCTCACAGATACTGGTGCTGAAGAGGACAGTGTTAGTGCTCGGCTGGGacagGGTGATCACTGTGTTCAGGATGAACTCGTTCTCTCGCTTCTTTGTACAGCCTTCAGAGTGGAAAGGCGGCGTTCAGCATCGCGAGCACATTGTGTGTGCAGCATTTCAGCCACCTCAGACCTTAGTCACTGGTGGTAGGGATGGTGAGATTATAGTCTGGAACAACAGCACTGAAAATGCCATATGCAAactatacaaaaatacagaacacCAAGACTGCAAGTTCAGCTCAcATAGCGCTTTACCTAGTACTCCCAGTACTAAACAACCAAAAGCCACTTCCAGTGAAAAAGACTCAGAGAGTTATATTGTGACCAGACTGGCCTTTctggaaggaagaaaaagagctGCTGCAACAGGTGGAGCTGATCTGGTGTCATGTGGCGGTTCAGGCATTGTTCGTTTCTGGAATACAGCGAATGCTCGATTAGTTGGCAAGTTTGTGGCTCATGAAGGCTCTGACTCCATCATAATGACTGTAGATGGTAGCGGTTGTTACCTGGTCACAGCGGATATGGGTGGAGTGCTGAAGGTGTGGGACATCCAGGAATATTGTCTCCAACCATCTGAGAGTGTAATCAATCAGGCGCCAGAGATGCTATCGAGCCTCCACCATCATGTTGACCGCATCACTCACTTGGAAACGTGCGTCCACAGCGGCCGTCTCTTTCTCCTCAGTGCCTCGGCTGATTGCAGTCTGGCTCTCAGCTTCCTGCCTGGAGGAACTATAGGGACATTTGGACAGGAAGTGCACTGGAACCTGGCAGAAATCAGTGAAGCGTTTGTGAAGAGAGAGCAGGAAGTGAGCACAGAGGTTACCACGGAGAGTGGGACAGAAACAGATCTGCAGGAAACACAGCCTGTACAGAGCTCTCAACATGCTGAGAGATCAGAGAGCAATACAGAGACTGAGGAGGAGAAAGATTACACActGCAACTTCATACCCTTGATAATGACACTACAGTGCAGAGATCCAGAAGAATCCACAGAGCTTTGAGGCAGCAGAATGAAAGCACACAGCATCAAAATGTCCATGGTGTCTGTAATACATCTACTGGGATGTTCAGCAAACTCCGAGTGGAGGAACTGGCCTCGCTAGAAGAGCTGAGCAAACCTGACTTCATCATCAATCctcatttatattttgggaagaTGTGGGATTCATCATCTCCAACTCCTCCACCTCTTCCTGTGACTGGAGAAAATCTAAAAGCACCCTTTGATGAAAAGAGTTTGTTTCCTAAAGAAGTGCTGGAGCAGGTGGACAAGCCCCGGCGTTACACCCAGAAATTTAACATGATGAGAAACTATGGAAGAGCCATCAGGAGCATGGGGAAAGCCAAAGCCAGCACCTCTGGAATCCATGAATGTTCTCTCAGAAAAGGTTTctctcaCTGA

Function

symbol description
wdr49 Predicted to enable calcium ion binding activity.

NR:

description
PREDICTED: WD repeat-containing protein 49

GO: NA

KEGG:

id description
K24747 WDR49; WD repeat-containing protein 49

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304980.1 True 3470 mRNA 0.49 21 21689428 21733571

Neighbor

gene id symbol gene type direction distance location
pdcd10a pdcd10,LOC108410962,LOC107600227,LOC107686582,LOC103039132,LOC107662908,LOC108411198 coding upstream 7105 21664634 ~ 21682323 (+)
golim4a golim4 coding upstream 71092 21590626 ~ 21618336 (+)
LOC113526575 LOC108264858,LOC108440598 coding upstream 225996 21340396 ~ 21463432 (+)
LOC113526557 zgc:86725,LOC105902989,LOC108428114,LOC108269395,LOC105895662,LOC106561611,LOC105018274 coding upstream 364161 21318185 ~ 21325267 (+)
LOC113526806 LOC108264295 coding upstream 377922 21255064 ~ 21311506 (+)
fam168a fam168a,LOC108264593,LOC107594362,LOC107600264 coding downstream 1149700 22883271 ~ 22934025 (+)
LOC113526468 arhgef17,si:ch211-248g20.5,LOC107660677,LOC107658857 coding downstream 1251838 22985409 ~ 23099891 (+)
trnak-cuu_22 NA coding downstream 1429536 23163107 ~ 23163179 (+)
LOC113526446 LOC108264850 coding downstream 1527051 23260622 ~ 23267820 (+)
rps3 rps3,LOC102795110 coding downstream 1536522 23270093 ~ 23274655 (+)
G102903 NA non-coding upstream 183806 21504744 ~ 21505622 (+)
G102703 NA non-coding upstream 495024 21149084 ~ 21194404 (+)
G102585 NA non-coding upstream 684707 21004336 ~ 21004721 (+)
G102415 NA non-coding upstream 755334 20930187 ~ 20934094 (+)
G102374 NA non-coding upstream 1081834 20606602 ~ 20607594 (+)
G103130 NA non-coding downstream 315603 22049174 ~ 22049382 (+)
G103140 NA non-coding downstream 394798 22128369 ~ 22170834 (+)
G103246 NA non-coding downstream 792804 22526375 ~ 22526736 (+)
G103270 NA non-coding downstream 958521 22692092 ~ 22692310 (+)
G103297 NA non-coding downstream 1133169 22866740 ~ 22869283 (+)
LOC113526807 sptbn4,LOC107670604,LOC107672319 other upstream 587212 21026027 ~ 21102216 (+)
prx NA other upstream 722157 20939413 ~ 20967271 (+)
irf2bp1 irf2bp1 other upstream 840090 20844674 ~ 20849338 (+)
pid1 pid1 other upstream 1003240 20638760 ~ 20686188 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other upstream 1596496 20076965 ~ 20092932 (+)
zbbx zbbx other downstream 28876 21762447 ~ 21813210 (+)
LOC113526422 p2ry6 other downstream 1209138 22942709 ~ 22983599 (+)
relt relt other downstream 1379513 23113084 ~ 23148872 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other downstream 1430075 23163646 ~ 23259257 (+)
serp1 NA other downstream 1838980 23572551 ~ 23575713 (+)

Expression


Co-expression Network