LOC117597519


Basic Information

Item Value
gene id LOC117597519
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 29520447 ~ 29550296 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304985.1
ATGGCTCCTGACGCGCCCAAACTAAGGGGACCCGGACCCCTGGGTAGAACGACGACCGTGGTGAGGCCAGAGAGGAGGCCGAGAGGAGAGGGGCGGCGACGCACCGCTGAGAGGCCAGAGGGAGCGACACCTGTGGCGAGGCCAGAGAGGAGAACGACGACCGCGGCAAGGCCAGAGGGGGGAGCGACGACCGCGGCAAATGCAGGAGCATGGAAGGAGACCTCTGGCAGCCCAACGCTTGGTCCTCACAGCCCAACCCCAGATTCTCACAGCCCAACTCCTGGTCCTCTCAGCTTAATCCCAGATTCTCACAGCCCAAACCCTGCTCCTCACAGCCCAACCCCCGGTCCTCTCAGCTTAATCCCAGGTTCTCACAGCCCAACCCCTGCTCCTCACACCCCAACCCCAGATTCTCACAGCCCAACTCCTGGTCCTCACAGCCCAACCCCTGGTCCTCTCAGCTTAATCCCAGTTTCTCACAGCCCAAGATTCTCACACCCTGGCCCAAACCCTGGTCCTCTCATCTTAATCCCCTCACAGCCCAACTCCTGCTCCTCACAGCCCAACACCTGGTTCTCACAGCCCAACCCCTGGTCCTCTCAGCTTAATCCCAGTTTCTCACAGCCCAACCCATGCTCCTCACACCCCAACCCCAGATTCTCACAGCCCAACTCCTGGTCCTCACAGCCCAACCCCTGGTCCTCTCAGCTTAATCCCAGTTTCTCACAGCCCAACCTATGCTCCTCACAGCCCAAACCCTGGTTCTCACACCCCAAACCCTGGTCCTCTCATCTTAATCCCAGTTTCTCACAGCCCAACTCCTGCTCCTCACAGCCCAACACCTGGTTCTCACAGCCCAACCCCTGGTCCTCTCAGCTTAATCCCAGTTTCTCACAGCCCAACCCATGCTCCTCACAGCCCAAACCCTGGTTCTCACACCCCAAACCCTGGTCCTCTCATCTTAATCTCAGGTTATCACAGCCCAACCACTGCTCCTCACACCCCAACTCCAGGTTATCATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304985.1 True 1023 mRNA 0.59 2 29520447 29550296

Neighbor

gene id symbol gene type direction distance location
si:ch73-103b9.2 c4h16orf46 coding upstream 742430 28774321 ~ 28778017 (+)
cibar2 fam92b,LOC108442585 coding upstream 769706 28742035 ~ 28750741 (+)
gins2 gins2,psf2 coding upstream 1052697 28461829 ~ 28467750 (+)
emc8 emc8,LOC106587369 coding upstream 1060270 28453060 ~ 28460177 (+)
mthfsd mthfsd coding upstream 1296943 28215787 ~ 28223504 (+)
iqcg NA coding downstream 166297 29716593 ~ 29724067 (+)
ddb1 ddb1 coding downstream 556397 30106693 ~ 30126222 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding downstream 707772 30258068 ~ 30265561 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 722248 30272544 ~ 30285534 (+)
LOC117597588 NA coding downstream 754336 30304632 ~ 30305794 (+)
G107075 NA non-coding upstream 37983 29482234 ~ 29482464 (+)
G106867 NA non-coding upstream 374927 29144954 ~ 29145520 (+)
G106808 NA non-coding upstream 441849 29078228 ~ 29078598 (+)
G106788 NA non-coding upstream 640830 28879278 ~ 28879617 (+)
G106733 NA non-coding upstream 712235 28807432 ~ 28808212 (+)
G107140 NA non-coding downstream 135078 29685374 ~ 29689816 (+)
G107216 NA non-coding downstream 372456 29922752 ~ 29923072 (+)
G107222 NA non-coding downstream 420582 29970878 ~ 29971093 (+)
G107223 NA non-coding downstream 421186 29971482 ~ 30064438 (+)
G107381 NA non-coding downstream 714668 30264964 ~ 30356549 (+)
cmc2 cmc2,LOC107711752 other upstream 716375 28799464 ~ 28804072 (+)
def8 def8 other upstream 1358578 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 1449762 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 1554139 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 1974921 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 843964 30394260 ~ 30498315 (+)

Expression


Co-expression Network