c2cd5 (c2cd5,LOC107686569)


Basic Information

Item Value
gene id c2cd5
gene name c2cd5,LOC107686569
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30365619 ~ 30408560 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034304988.1
TCTGGCAACCCTGAGTGATCCCTCCTGCATGTAGGTGTTTCTGAGGAAGCTCTGCACTGTGTTTATCTTCAACAAgcttcattaatacattaataacaccCTTTTGGACCAGCAAGAGCGAAGACATGATCTTAAATAGAGCTAAATAGAACATTTAGCATTCTTTGTTgtgatattaatttaaaaaatccgtGTTATGGGAGTTAAAAGGACGTCAAGCCGATGGACCATCAAATTAAAACGCTGTGGTGTTTTTACAACtttgtttattaaacactgatATCAGGTTTGGTCTGAATCTGCACCATGCCGGGGAAGCTGAAGGCGAAGATCATGGCGGGTCGACACCTGCCTGTGATGGACCGCGCCAGCGACCTCACCGATGCTTTCGTAGAGGTGAAGTTTGGAAACACGACTTTTAAAACTGACGTGTGTCCGAAGTCACTAAATCCTCAGTGGAATTCCGAGTGGTTTAAGTTTGAGgtggATGATGAGGATCTGCAGGACGAGCCGTTACAGATCACGGTTCTGGATCACGACACGTACAGTGCGAATGATGCCATAGGGAAGGTCTACATCGACATCGACCCGCTGCTGTGCAGTGAAGCCGCCACCGTCATCTCCGGCTGGTTTCCCATCTACGACACCATCCACGgtataAGAGGAGAGATCAACGTCCTCGTTAAAGTCGACCTCTTCAATGATCTGAACCGCTTCAGACAGTCTTCCTGCGGAGTCAAGTTCTTCTGTACCACGTCCATCCCGCGATGCTACCGCGCCGTGATGGTCCACGGCTTCGTGGAGGAGCTGGTGGTCAACGAGGATCCCGAGTACCAGTGGATCGACCGCATACGGACCCCGCGAGCGTCCAACGAGGCGCGGCAGAGACTCATCTCTCTCATGTCAGGCGAGCTCCAGAGGAAGATCGGGCTGAAGGTGCTGGAGATGGGCGGGAACGCCGTGGTTGGCTACCTGCAGTGTTTCGACCTGGAAGGAGAATCCGGCCTGGTTGTGCGCGCCATCGGTACCGCCTGCACGCTCGACAAAATCAGCAGCACACACGCACCTGCGGGGGCCACAAACCCCGCTAACTCCTCTCCGTCAAAAGATATAAAAGAGGCGGGTTTTGGGGAGGAGGCCCCTGGTGTCCCGTTGTGCTCAGGACCCCCCACCCCACTGAGAGCCCAAACCTTCTCTTCCTTCTCCCCCTCCAAGTCCTACAGCCGCCAGTCCTCCTCCTCCGACACTGAGCTGAGCCTCACCCCCAAAACCGGTATGGGCAGCGGGGGCAGTGCCGGGAAGGAGGCGGGGCCTCTTAAAGCACTTCTGAGACAACAGACGCAATCGGCTTTGGAGCAGAGGgaGTTCCCTTTCTTTACACTGACCAGTTTCCCTCCTGGTTTTCTGCTTCACGTGGGAGGAGTGGTGAGCGCACGGTCAGTCAAGCTTCTGGATCGAATCCACAACCCTGACGAGCCGGAGACGCGAGACGCCTGGTGGGAGGAGATCCGACAGGAGATAAAGTCTCACGCTAAAGCTCTGGGCTGCCATGCAGTGGTGGGATACAGCGAGTCCACCAGCAtctgcgAGGAGGTGTGTATTCTGTCCGCGTCAGGCACGGCGGCGATCCTCAGCTCCCGCTTCATGCAGGACGGCGCGCTGGACACGGAGCACAGgtttgATGACGTTGTCCCTCCTGCCTGTGGGTTTTGTCACATCCCGTATGACGAGTTGAACATGCCGTTTCCGGCTCAGCTCACGTACTGCCACTGCTGCCGCCGCCATAAAGTCCCCGACGTGCTGTTCACCACGATAGACGTGCCGACTGAAGCCCACGTCACCGGCAAAGGCTGTCTGATACAGGCCAgGCTGTGCCGCACGAAGAAGAAGGCTCAGGGCGAAGGGAACGCCACGGCCATCAGCAACCTGCTGCCGTTCCTGGAGTATGAGCTGCACACGCAGCTGATGAACAAGCTGAAGCTGCGCAGCATGAACGCGCTGTTCGGCCTGCGCATCCAGATCAGCGTGGGAGAGAACATGCTGCTCGGCCTGGCGtcagcgACAGGTGTGTATCTGACAGCGCTGCCGAGTCCAGGAGGAATCCAGATCGCAGGAAAGACCCCCAGTGACATCACATACGAACAACATCTctcaaacatgcaaaaaaaaatcaacgaCACTATTGCCAAAAACAAAGAGCTGTACGAGATTCACCCCCCTgAGTTTGTCGAGGAGCTGATTGGCTCGCCGATCCCTGAGCCGCGGCAGCGGTCCCGCCTCTTTCGCTCGCACTCCGAGAGCTCAGACGAAGTGTCAGAGTTAGACCTGTCTCACGGGAAGAAGGACGCTTTTGTTCtggagATCGATGACACAGATGCTTTTGAAGACATTCATTCCCTCCTCACCGACGCCCCGACACCTCCAGGGTTCTACAGCTGCAACACTGAGATCATGCCTGGGATTTATAACTGGACTTCAGGTTTACAGatgtttACCTCTGTGAGGGTGTTCCGACTCAGCAACataaatctgaccaatcagggcCTGAATAAGATCTTCAATGATCTGTGTGAGAACCTGCTCAAGagtctGTACTTCAAATTGCGCTCCATGGTGCCCTGCTGTCTCTGCCACGTGAACTTCACCGTCGCTGTGCCTGAGGATGAGCTCATACAGGTAACGACACACTCGCTGAgcggaagGATCACACTAGCAGCTGCCGTGTGTGAGTGTGGAGAGAAAACACTTATCAGAgttacagaaaatgaagagCAGCTTCAGTTCCCTTTAGAGCTCCCTGCTgaatcctcctcctcctcctcctcctccaaccCTCTGAGCTCTACCAAAGgtttgTCCGAGGTTTCAGGAGCTCTTCCGAGTGCTCGAGcCCCCTCAGTTGATTACAGTTCCTTTACAGACAGATGCAGTTCCTGGATAGAGCAGCTTAGACTGAAAGCTCACACCATAAGACGAGGATCAATTAAAACAAtgtcctCTCTGGAGAAGTCCAGTCCGTTGCCAGAAGGTCGTTCTCGCTCTCTGAGGTCGAGTCGTTCGTACCCCGGAGGTTCCGTCACTGTGGTTAAAATGACGCCGCTGTCTTTTATTCCTGgaaccaaaataataaaatacctCGGCATCATCAACATGTTCTTCATCAGAGAGACCACCTCACTGCgagaggagggTGGTGTGAGCGGGTTCCTGCACTCGTTTATAGCTGAGGTGTTTGCTATGGTACGCGCGCACGTCGCTGCTCTGGGTGGAAACGCCGTCGTCTCCTACAGcatgaaggagtgtgtgtttatggagaATCCTAACAAGAaccagGCTCAGTGCCTTATCAACGTGAGCGGAGATGCCGTGATTTTCGTCCGAGAGTCTGAACTCGAGGCCACGCCTCCACAGCCTCAAACATCCTGCGGTGGAGAGGGgacgtgaacacacacacaaacacacacacacacacacacacattttatttattgtaagcCAAGAAGCGAGTTCCAAAGAAAAGTGCGAGCCAAACACGTGACGAGTTTTACAGCCAATCCGCAGCATGAACACAGACGAGTCGTGAATAAATTAAAGTTTATATCCGCGACGTAAAAAGGTGAAAAACTTCCGTCCGCCTGTCGGCCATTTTGTGCACATTCCAGTCATCCTGAGGAAGCCGAGGCAGCTAAGAGCTTAAAGCTAAACTGATAcgatgtgtataatgtgtgtgtctaACAGTGTCGACACTGAGcgccatgttttattcctcacctACTTCCTGTTTGCGTCATTATTAAAGGGGCCGTTTGTAAGGTTTAGCGCCCTCTGCTGCCGGTCAGGCTAACTGCAGATGCTGTCATAATCAGGCAAGCTGATTTCTTCCACCTGTTTAAACCACACCTGCTTTATCAGTTACCTTTTACGGAAAAATCGGAAGCTGTGTTTCACCTAGGGGCGGAGtttatttcagggccagaaaactGTTAAATATGTACAAGCGCTTGAGatgaaaacagtaaaatgaataacatgGCAAGATTCCAAATCTCTTTTTATGAATCTTTCAAGTTATTATAATTGCACATTACGATACATTTTATAGGAAGAACTGCAGCTGAGGGCGGAGcttatttcagggccagaaaaatgtacaattcatacaaaagcctgaaaaaaaagaaccacATCACAGTTTTTTTGAGGtatacttaaaatatttactgttgCACATGAAGAAACACTCCCATAAcaccttttatttaaaaaaaaaaa

Function

symbol description
c2cd5 Predicted to enable calcium ion binding activity and calcium-dependent phospholipid binding activity. Predicted to be involved in intracellular protein transmembrane transport; positive regulation of transport; and protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human C2CD5 (C2 calcium dependent domain containing 5).

NR:

description
C2 domain-containing protein 5-like isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034304988.1 True 4272 mRNA 0.51 28 30365619 30408560

Neighbor

gene id symbol gene type direction distance location
b4galnt3b NA coding upstream 12131 30311233 ~ 30353488 (+)
LOC117597588 NA coding upstream 59825 30304632 ~ 30305794 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding upstream 80085 30272544 ~ 30285534 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding upstream 100058 30258068 ~ 30265561 (+)
ddb1 ddb1 coding upstream 239397 30106693 ~ 30126222 (+)
lmf2a lmf2,LOC108437435 coding downstream 2106 30410666 ~ 30426455 (+)
si:dkey-88e18.2 NA coding downstream 177223 30585783 ~ 30592140 (+)
vwf vwf coding downstream 219852 30628412 ~ 30666725 (+)
LOC113526339 LOC108264048 coding downstream 259716 30668276 ~ 30687719 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding downstream 281375 30689935 ~ 30699382 (+)
G107381 NA non-coding upstream 9070 30264964 ~ 30356549 (+)
G107223 NA non-coding upstream 301181 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 394526 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 442547 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 675803 29685374 ~ 29689816 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 44296 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 149063 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 320274 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 419516 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 439399 30847959 ~ 30848474 (+)
cmc2 cmc2,LOC107711752 other upstream 1561547 28799464 ~ 28804072 (+)
def8 def8 other upstream 2203750 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2294934 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2399311 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2820093 27526123 ~ 27545526 (+)

Expression


Co-expression Network