LOC117597525


Basic Information

Item Value
gene id LOC117597525
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16938891 ~ 16944430 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305009.1
AGTTGAAAGAAACCAGgtctgttttaaaatgataatgacTGTAGCAGTTGTACAACTTTAGAAGAGAAAACATGCCAATGCAGTAGTCAGTGCAGTGATGtggtcagtgttttatttttaacagtttttctgAGTCTTTTTTGAAGTGCTGAAGATGTCCAAGCCTCAGAAATCTCACAAGGCCATGGGAGACCAGGAGTGGATGTCCCGCCTGCGGCAGTTTGCCAGCACAGGCGTGTGGCCCTCCGAAGCAGGCAACAGACCTGCTCCTCATCAGAAGAAGTGGTATGACCTGTTTCAGAGGataGATAAATGTCCAGCGCAGGCCCGTGGACAGACGTCCCTTTTTGGCGGAGTACAGAGCTGTCTTTGTGGATTCCACCTTCCCAGGGGAACCAGTGATCAGCCTGCCTCCACGTCCGGTGCCGCCCCTACCCCAACCTCTGCCCAGACGACCAGACGACCTCCACTTAACATATCAATGTTTACAAAGCCATGGTTTGGAGGGACCCACAGTGCTGCAGCCAAGCCTAATGTAAACATACCAAGGAGGAAGCTGGGGCATCAGTCCTCATCAGCCTCCTCCCCACTGTCTGAGAGTGCCAGCCCTTCTCCTTCAGCCTCTGTGACAGCCAGCACTCATCCTTCCTCCACCTTGAAAGCAAGCTCTTTTCCTCCTTCCACTGTGAGGGCCAGCCCTTCTCCTTCAGAGTCTCTGAGGGCCAGCCCTTCTCCTTCAGAGTCTGGAGATCCGATCACCTCTGCTGCTCCCAGTGGTGTGCCGACTTctgctcctccagctcctgatGATGGTTCTGGGTCCGTTTCTTCTCTGCCACCTGAAATGAGGAAGACGATACCCTTACAAGATCAGCGGTGGATTGCATCTACACTCTATCACGGTGGCAGACTTCGGTCAGGCTTGAAGCTCTGGTACGAGCCTCCAGTCCCCTCCCTCATCTACCACCAGGCTCCATTACCAGACTGGTTCTTCACACACAGGCTCCTGGTGTGGATGCCCTACCACCTGTGGAAGGTCAGGCTGTTTTGTCCTGTCTGTGGGAAGCAGCTGACTGGCTATGGCATCCATAAAAGGGCTCGCAGGGTGCTGGACATCGACAGGTATTACTTGATGGTGACAGAGACACTCAGGTGTACCGCTTGTCGTCTGAATTACATTTCCACCAGCCAGACTGTCCTGAACCAGCTCGACTTGCCCCACCGGGCACTGTTTCGCGTGATCTTGACATACAAGTATGCATGTGATATTCGTGTCATACGCCTGCTGAGGGAGAGGACACTTGGAAATAGCCCCACTAGACTGGCCAGACAGCTAAAGGAGAACCATGGGGAGGAGTGGCTTCACCACTTGGCCCACTACATGGAGGAGTGCGCTGTCTTTGCTGACCGCCCCAGCTTCCTCCCTGTTGCTTTTCAGGAGCCTCCGCAACCCATTGAAGTGCCTACCAGCAAGTGGCTGTTGACCGTTTATGGGAAGGACAGCATAAGCCGCCTGGATCATATTAAGGCCAGCATCACCTCAACATTTGGgaccattttaaaaatggattcaACAAAAAAGATCACGAAGAAGCTGGCCGGCCATGCCCGGGGCACTGCGCAGTGGATGTCCTCTGTTGGCAACGAGAGAGGACAGATACTCATCAGTGTCCTGACTGCCCAGGAAGGCCCTGGTCTGGACTCCATGGTGTCAGGCCTGGTCAGCAGGTACCAGCAGGCAGGGGTGGCTCCTCCGGTGCTGCTGTATGTGGATTCTGGCTGCTGTATAGACAAGGGGCAGAGCAAGCTGCAGACCCGTTTTGGAGGATGGCCTGACCTGAACATCAGGCTGGACATCTGGCACTTTATGCGGCGACTGGCGACAGGGTGCTCTACGGATGCTCATCCCCTCTACCCAACCTTCATGGCACGTCTGTCGGCGTGCATCTTTGAGTGGGATCCGCATGACGTTGCTCTTTTGCGTCGGGCGAAGAGAGAGCAGCTGGAGGACGAAAGGCTGCCTCTGATCACTGATGACCTGGTGAACAGGCGCATTTCAAAGAAGGAGCTGGCCCTCTACTGCCGTCAGAGGACTCGTGGAGTGGAGACCACAGTTCGCCTGATTGACCACCTCCTGCAGGagctgaaagaggaaaaggGGAGAGACCTTATGGGTGTCCCTCTGCTGGACACGGTGAGGATGGAGCACATATGGCGTGTTCAGAAGAGGCACGTGAAGTGCATCCAGGACGTGCCGGGTGTGTCTCTCTACACCGAGACaggcaccaccaccaccaaggGAGGGATAGTGCTCACCAGGTACAGGTGCGCTAGGGGCTCAACATCACTCGAGTCTTTCCACTGCCACATGCAAAGGTTCATTCCAGGAACCAGCGCAAACACCCTGAATTTTCAGCTCTATCTCCTGGAAGGCCTGAACAGGTGGAACCAGGACCGGGCAGCAGCTTCCTTGGCCACCAAGCTATCCTCTCTCCTCACCTATGCAGGGGAGGTGGTGCActgtataaacacaaacagtctgAAGGTGTTCGGGAGGAAATACATTCCCAGCTTCCAGGCCCCTTCGAAGTACACTGGGGAGCTTATCGGAGTGGACTACCTACTCGCTCAGACTGGACAGCCGCTTCAGAGGGTGGACCCAGATGCTGAGGCAACAGACCAGCTGCTGGAGGAAGTTAATGTCGAGGAGCAGGAGGATGAAGGATTTGAGGAGGACCTAAGTGATGATCCCACCTTGGCCTCATTGCTAGAAGATCTGACAACAACTGCCGCCAGAATTCACCCTGCTGCTTCCTCCGCCCCGCCAGCCGCCGCGTGTTCTACCGCCCCGCCATCCGCcgcgtcctcctcctcctcccagcCAGCCGCCGCATCCTCCTCCCAGCCAGTCGCCGCATCCTCCACCGCCCCGCCATCCGCTGCGTCCTCCTCCCAGCCAGCCGCCGCATCCTCCTCCACCCCGCCATCCACCCCGTCCTCCACCGCCCCACCAGCCGCCGCGTCCTACTCCGCCCAGCCATCTGCTGCGAGCACTGATATGTCTACAACTCCACCTGGTATCAGTGCTCCAGATTCTCCCACTCAAGTGCCTGAGGAGACTTTGGCTGTGGATGATCAAAATGTGCCAGGGATGGACCGGGTGGACAGCCTGGCAGATTATCTGGTGGAGATGAGGCATCAAACTGGTCTAACCCTCAGCAGTCAGCAGGTCAGTGAAATTGTGGCCCTCTGGCAGAACCTGCTGGATTTTGACAAGCAGCGGGTGGTCTTTGCTGCCAGACACCAGGAAAGGTTGACCACAGGGAGGTTTCGGTCTCCTAAAAAGAAGGCCGTTTTCACTCCTGGCATCGACAGCTTCACCCGCCCAGTGGCCAGACTGTTGCCGGCTCGTGGAGGCCATTTTCATCAGACTCTGCAGGATTCACAAAAATCCGAGGAGGAAGGGCAAGGGCTCCCTGACAAGATGGTCTCTAATCCTGCACGACTACCGCAGGATCCGGCAGCTGATCTTGAACAATGGGGCCATCATACAGAGCACCAATCTGCAGCTGGTGGAGGTGAATCAGACGACTCTGGTTCAATGGCACAATGAGAGAGTGAAAAGGCAAGACCTGACTCTCTTGTTGCAAGGAATGGATCTGCCTGATCCTCTTCCTGTTGCCGCTGAGCCTCTGCAATCTGCCAGCGCTCGTCCGGCTGCACCACCATTGCAAGGGCAAGGGCAAGAGCACGCGTACAGCTTGCCACACAACACGGTAGGGCAAGCCAGACAGAAGAGGTGCATCACCTCCACGTCCCCCCCAGACCCACGTGAGACAGCGAGACCAAAGCTGGCACCCCAAAGACAGTTGCTTCCTCGACCTCCAGGCGCTTTCGTCACACTTGCTCCCCACCCTAGCCCCACGTACACCGTGTTTGTGGTCCCTGGACCCCCAGCCACCACCACTCCTCAGCCCAGCAGCACTCCACCTTCTGTAGCGCTCCAGCCACCCCAAGCTAGCAGTATTCCTCCAGCTTCGGCTGTCCAACCACAAATGCCACGTCGACCACGTGCGTATACAAGAAGAGTGGAGGCGAATACTTGCAAAAAAATGTGGTCGCCACAGGACAGCGGAGACTGGACATAGCCAGTATAAGGGCACTATTTACTGTCCGAATACTGAGACTCTAACAAAAGAGCAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305009.1 True 4205 mRNA 0.56 12 16938891 16944430

Neighbor

gene id symbol gene type direction distance location
chd2 chd2,LOC107690375,LOC107715217 coding downstream 197820 16680922 ~ 16741071 (-)
LOC113534689 NA coding downstream 328581 16581362 ~ 16610310 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 855278 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 1439639 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 1465876 15471629 ~ 15473015 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 144211 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 477931 17422361 ~ 17478285 (-)
LOC117597582 NA coding upstream 776115 17720545 ~ 17725320 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding upstream 1338189 18282619 ~ 18524226 (-)
znf710a znf710 coding upstream 1789997 18734427 ~ 18741724 (-)
G100408 NA non-coding downstream 5069 16920567 ~ 16933822 (-)
LOC117597576 NA non-coding downstream 98782 16838916 ~ 16840109 (-)
G100444 NA non-coding downstream 113292 16825204 ~ 16825599 (-)
G100439 LOC107586879,LOC107732307 non-coding downstream 119741 16816348 ~ 16819150 (-)
G100416 NA non-coding downstream 176747 16761932 ~ 16762144 (-)
G100604 NA non-coding upstream 170685 17115115 ~ 17115334 (-)
G100629 NA non-coding upstream 206467 17150897 ~ 17151178 (-)
G100648 NA non-coding upstream 243728 17188158 ~ 17189433 (-)
G100663 NA non-coding upstream 304748 17249178 ~ 17264409 (-)
LOC113539580 NA non-coding upstream 401199 17345629 ~ 17354761 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 1581328 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 2591883 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 3376317 13550680 ~ 13562574 (-)
G98770 NA other downstream 3886580 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 4514913 12420437 ~ 12423978 (-)
G101178 NA other upstream 1243017 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3035639 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 3451436 20395866 ~ 20416574 (-)
G102566 NA other upstream 4009172 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4050911 20995341 ~ 21013100 (-)

Expression


Co-expression Network