nrn1la (nrn1l)


Basic Information

Item Value
gene id nrn1la
gene name nrn1l
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15043298 ~ 15072495 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305053.1
GGGCGCTGCAGGTGGAGAGCTCAGAGCGCCTCCGTCACGAAAGCGCGGGAAAAGTGCGTGGAAACACCGACTCAGAGCCGCAGCCGGGGTTTTTccccccttctttctttctttcttcttccctgCAGGATCCTTTCAGAATGACATCTCTGAGTAGCGTCTGCTTCCTCTTGCCTGTTGCTTTCCACCTCTTGATGGTGCCAAGCCTGAGCTCTATGGCTGCTGCTAGAAGGTGCGGCTCCATCTACAAGGGCTTTGCCCAGTGTCTTCTGGCCCTGGGGGACAGCTTGTCTGTCAACAGCCAAAAAGACGAGGACATGCACGAGATCGACTCAATCTGCAGATCATGGGACGATTTCCATGACTGTGCAAACCTGGCCATGGCTGGCTGCCCCGATGAAGCCGCTGCTGTGTGGGAGTCCCTGAGACAAGAGTCTAAAAAGATGCAGTTTGCAGGTAACCTGTATGACATGTGCTCTAGTCGTAGCCAATCAGCAGCCGACACAGGGGCTCAGAACCCAGACGAGACCAATCAAGAGTCCCTGAAAGGAAAGGCCAGTCATTTAAGCCTAGGCCAAAGCATCTTTCTCCCCACTTGCTTGTGTTTACTGTTCGTCTACCTGTGGATATAAACCAAGACTTTCTGCTTCAAGAGACATGCAGTGGAATGTAATGAATTACCAGTGGACTGACGTGTGTGATGTTGACATTTCTCAAAGGTAAcacattgtaaataataattctttttttctttataaaggcATGCTTTTGAACAGAATTCTACACATGTACGGTGCTCTCttgaattattggcaccttcatgaaaatgagcaaaaatgaatatCTAAAAAGAATAGCACATGCAATAAATGATTATATGGAGCTCAAACATACAAGGATATTGTGTAGTTTTACAAGACACTGGTTACAAAATTATTGCCCCccttacatttaatattttatgaagcCTACCTTGGAGAGAGTAAAAGCACTAAAAGAATAATAGCACAAAATCTGAAAAAGAATATAAAGTATAGCTTCACAGCATGCTGTTTTGAGAGTGACAGATATTATGTCaccttttcatgttttttcaaGTTCTCATTAGTCCAAACACAACTTAGGCAAACACTGAGAACTGCATACATTTGCAAGCATGCTTAATAATAACTGTATACAGCAAATTGGTTTTGTTTGACAACATACAAttgtcaggattttttttttcacaggatttgcaaaacatgtttatgaataaaatattacagttttattacaaatctgttattttcttctgtgtaaatatttgtatataacaTTCACAACaatgtataatttaaaaaaaaatgactgatatGGGAAGAAAATTATTTACTTAAGAGAATGTTGTGGTTCAATTTGGGAAATACTGTATGTCAAATATTCAGTGACATCTAGTTACATTCCATATTAGATATTTGTGAATAATGTTTGTGAGCCAACATTTAAAGCTGTTCAGCTCACATTCctcattttttcttctatttgttTTGTAATTCTTCTTGTTTTGATTGCCAATTTATTACTAATGCTGTTACTTTTTAGAGTCAGTAAGAATGTAGTGAGGATCCAAACTGTTCCATCTGTTTCGCCGTGTAGTCCAAGATTTAAAAGTACAATCAGtgagattaatgaatgaattttacaCAGTTGGATTACTGTAATTCTGAAGAGTCTGAATCTGTTGAGGAGCATTTTTAACTTTTGTTAAGATGTAATCTGGTGCTCCATGGTTCATGAATGACATGTGAATGTAAGAACTACTGTACCTCAAAGATGCACATCAATATCTCCTCAGAACTCAAATTGATGTTGCAATGCTCtctaataatattaaaaatgtataacgTGACTAAcagaacaattttattttattatctaattttatcattatttatttatttatttattttttggaaatatGACATTTTGCAGTCACTTTGTATTCCCTTCTGACATAAGATTCATAAGGATTCCAACTAGCATTATACTTTATACAAATGGAGGAATGAGATAAGCTGTGAGCACTGACTTGCTCCTTCACTCTAACCTTAATGCTCATTACTTTTTATGCTAGGTGGCTCGTGTGGGATCTTATGAATTTGCAATGGCGATAGCCCTTTAAAGATAAAGGGAGATGTCACATAGTGCATGGGTTCATTATAAGTCTGTCCTCATTCGTTTGAAGTTGAATCCTATATCATTTCACTGTCCATCAGATGGGAAATTTTATGTAGAAACTCTGGGATTAAAGGGATTTTCCACATGGATGCCATCAACCAGAAACCCCGATACTGCTTGTCCAATGCTTGCCACTTTGTTATTTATGTCAAATGGAGGTTTCAAAGATAATCTCAGAggcaaaatgaatttaattagaACATTT

Function

symbol description
nrn1l Predicted to enable identical protein binding activity. Predicted to be involved in neuron projection extension. Predicted to be located in extracellular region and plasma membrane. Predicted to be anchored component of plasma membrane.

NR:

description
neuritin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305053.1 True 2425 mRNA 0.38 3 15043298 15072495

Neighbor

gene id symbol gene type direction distance location
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding downstream 16430 15018958 ~ 15026868 (-)
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding downstream 28161 14988788 ~ 15015137 (-)
slc38a8a slc38a8 coding downstream 65148 14969784 ~ 14978150 (-)
pnp6 LOC108264829,LOC108424368,LOC103033869 coding downstream 261745 14771280 ~ 14781553 (-)
calb2a calb2,calb2a,LOC108264862,LOC107672188 coding downstream 282804 14748622 ~ 14760494 (-)
edc4 edc4,LOC107733561,LOC107726309 coding upstream 3379 15075874 ~ 15105110 (-)
nutf2 nutf2 coding upstream 32820 15105315 ~ 15119718 (-)
tsnaxip1 tsnaxip1 coding upstream 48552 15121047 ~ 15132206 (-)
pard6a pard6a,LOC107692936 coding upstream 104716 15177211 ~ 15200248 (-)
LOC113534617 LOC108264368 coding upstream 399134 15471629 ~ 15473015 (-)
G99493 NA non-coding downstream 394305 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 439826 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 507288 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 523514 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 590191 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 76908 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 87708 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 98816 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 103680 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 225110 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 696290 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1480724 13550680 ~ 13562574 (-)
G98770 NA other downstream 1990987 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2619320 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2638017 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 274671 15347166 ~ 15357563 (-)
G101178 NA other upstream 3114952 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4907574 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5323371 20395866 ~ 20416574 (-)
G102566 NA other upstream 5881107 20953602 ~ 20966910 (-)

Expression


Co-expression Network