ppfia1 (ppfia1)


Basic Information

Item Value
gene id ppfia1
gene name ppfia1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 21495122 ~ 21574846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305085.1
CGCAGTGTGACGTAGCCACAACAGAGTGGAAACAGCggatccaatctggcaaccctgctggAGATAACAAGAACACCGACCGGGAAAAGGGGCCAACATCCAGTTTTTAAAGTCCCCAAAGTCGCGGATTTCTTCCATCACATATCGGATTTACTGGCGAAAGCTCAACCCGAGACGACTTTATTTAAGGGgaagttgtttgtttttcagctcGGAGTGTTTTTGGAGAGTTTTTAGCCATCCCTTTTCCCGACGTTTCCTTTTGGATCATTACAGCgagctgcttttcttcttctggaCGGAGCCAGTGATGTGGCTCAAGAGCTCCCGATAAAACTCCACTGTTAGATagaaatatttccatttttcacattttgaggTTTTTCTTTGGGATTTTTGTGCCTTAAGTCCCACTTTTCCGCATCTCCAAGTACAAGAGAAACACTTTAAAAGGCCCAAACCCGGTGTTTGGTCTGGCTTTTAACGGTAGTTAGCGCGCGAGCGAGCTGGCTAAGCTTGGAGCTAACACGGTGCTAATTTAGCTTTGTGATAAGATTAtgatcatttttctataacagtattTATACGACCATTTATACAATGGTTTTTTAGAGCACAGCTAATATAAAgtgttagtttattttattttctgtcattttttgttGGAGTTTTTAGCTGGTCAGTTATGTATTCTTCTTAAAGCTGGTAGTAAGGCGAGCTAACTAGTTTAGCATTTGGAGAATAATGGCACTCTGGAGTGATTGAGGCCCTTTTcctatgttttcttttttttggatcCATTTCTAAAGTCCGTTCAATGGATTCGGTGTGTTTTTGGATGGATTGGAGGAGGACAACCTGCAACTGAAACTGCATTAGAAAACTCAACCTGCTGATTTTAGGGTCTGATTTTGAGATCTGAATTCATCTTCCAAACACTGGCTGAAAAACCCACATCAGTGCTGCAAAGATGATGTGCGAGGTGATGCCCACCATCAGCGAGGCGGAGGTGGGGAGTAATGGAGGGGGGCGGGGCTCTGGGTCTCCTCTCCAATCGGATTCTGAGGGACATTTCGAGTCTCTGATGGTGTCCATGCTGGAGGAGAGGGACAGGCTCCTGGACACGCTGAGAGAGACTCAGGAGAATCTGGGACTGACGCAGGGCAAACTGCAGGAGGTCAGCCACGAGCGAGACGCCCTGCAGAGGCAGCTCAACTCCGCCCTGCCTCAGgaGTTTGCAGCACTGACTAAGGAGGTGAATATGTGCAGGGAGCAGCTGctagagagagaagaagaaattgCCGAGCTAAAGGCCGAGAGAAACAACACACGACTGCTGCTGGAGCATTTGGAGTGTTTGGTGTCTCGTCACGAGCGCTCCCTCAGGATGACGGTGGTGAAGCGTCAGGCTCAGAGCCCAGCCGGAGTCTCCAGTGAAGTGGAAGTTCTCAAAGCCCTAAAATCCCTGTTTGAGCATCATAAAGCCCTGGATGAGAAGGTGAGGGAGAGATTGCGCGTTGCTCTGGAAAGGTGCAGCGCGTTGGAGGAGCAGTTAACAGCTTCTCATAAAGAGAATGCCTTACTACGAGAGCAGAACAATCAGAAGAAATTGTTCATCGATGGCACAGCAGAAATCAACCACAACTCTGAAAGCACACCCAGCACCAATGGCAAGAGGTCATCAGATGGATCTCTGGGTCCTGACGAGGAGGTGGGAAAGGTGTCAGAGCTGCAGGAGgtgatggacagacagagcAAAGAGCTGCTGCAGATGAAGGAGCGTGTCGTTTCCCTCAGCAGCAGAGTGAGCGAGCTGGAGGAGGATCTGGACACAGCCCGGAAAGACCTCATCAAGTCAGAGGACATGAACACTCGCCTCCAAAGGGACATACGAGAGtCTCTCGCTCAGAAGGATGACATGGAGGAGAGGATAACGACACTAGAGAAACGCTACCTGGCAGCTCAGAGAGAAGCAACATCTGTCCACGACCTGAACGACAAACTCGAGAACGAACTTGCCAACAAGGAGTCTCTCTTCCGccagACGGAGGAGAAGAACAGGCAGCTGCAGGAGCGGCTCGAGCTCGCCGAGCAGAAACTCCAGCAGACCATCCGCAAGGCCGAGACGCTTCCCGAGGTGGAGGCGGAGCTTGCTCAAAGAGTCGCTGCCCTCAGCAAGTCTGATCGTTCTGTGTGCTGTGCCTCTAAGGATACTAAGGAGACTAAAGCGCAGAGGAAGGCTGAGGAAAGGCACGGCAACGTGGAGGAGCGCCTGCGACAGATGGAGGCTCAGCTGGAGGAGAAAAACCAGGAACTGCTCAGGGCTCGTCAGCGTGAGAAGATGAACGAAGAGCACAACAAGCGTTTGTCTGAGACGGTGGATAAACTTCTCTCCGAGTCCAACGAGAGACTTCAGCTGCATCTAAAGGAGAGAATGGCTGCGCTGGAGGACAAGAACGCCCTCATCCGTGAGCTGGAGCACACGAAGAAACTGATTGAAGAGTCTCATCATGAAAAGGAGCAGCTCCTGATCCAGATTGAGACAATGCGATCAGAGAACGATCAAGATCGCAGCAGGAGTAACTCTTTGCTGCACCAGGGGCGCTCTCACATGGGCAGCACGCCAGACTTCAGGTACCCAGTCTCTGCGTCCTCCATGATTGACAGCCATTCTGACCAGTACAGCAGCTCACTGGTGCTGAGGCGGCCTCAGAAGGGCCGGGCTGCTGCTCTACGAGACGAGCCCTCCAAGGTGCAGACCCTGAACGAGCAGGAATGGGAGCGCGTGCAGCAGGCCAACGTGTTGGCCAAAGTGGCGTACGCGTTTGAGAGTGACATGGACGTGTCTGATTTGGAGGATGACCGAGAGACGATTTTCAGTTCAGTGGACCTGCTGTCCCCTGctggacagacagatgcacaAACACTTGCTCTAATGCTGCAAGAGCAGCTTGATGCCATCAACAATGAGATTAGAATGATtcaggaggagaaggagaacacGGCGCTGCGAGCTGAAGAGATCGAGTCGAGAGTCGGGAGCGGTGAAAGTCTCGGCTCCCGGTTCCGCTCCATGAGCTCGATACCGCCCTCATACGGTTCCCCCCACCCCGGCTCAGCACATTCTGGCTCCTCCCCTCCAGGTTCAGGTCACTCCACCCCTCGGCGAGTTCCGAGCAGAGAGATCGACCGCATGGGAGTCATGACCCTGCCTAGTGATTTGCGGAAGCATCGTAGGAAGCCTGCGCAGGACGACAAAGCGTCTATCAGATGTGAGACATCACCTCCGTCTACTCCTCGCTCAACGAGGCTCAATAAAGGAGGGCATGCTGCCAGTCACGAGGACATCCGAGACATCCGAAGtaTTTCTGCAATGCAGGACGGACAGGGCAGTAACCCcagcagcagtaacagtagtCAGGACTCCCTCAATAAAACCGCCAAGAAGAAAAGCATCAAGTCTTCCATCGGCCGTTTCTTTGGCAAAAAGGAGAAAGGAAGGCCAAGTCTTCCAGGAAAAGACTCCTCCAGCCAAGGAGGTACTCCAGAGGGAGAAGCTTCCCAGGATTCAGTGGGGCTGGGCAAACTCGGAGGCCCTGGTgaaaagaacaggaagctgCAGAAGAAGCATGAATTGCTGGAAGAAGCCCGTAGGCAGGGGCTTCCTTTCGCCCAGTGGGATGGACCTACTGTAGTTGTCTGGCTGGAGCTGTGGGTGGGAATGCCAGCGTGGTACGTGGCAGCCTGCCGTGCCAACGTGAAGAGCGGAGCCATCATGTCTGCTCTATCAGACACAGAGATCCAAAGAGAGATCGGCATCAGTAACCCACTGCATCGCCTCAAACTGCGCCTCGCCATCCAGGAAATCATGTCATTAACCAGCCCTTCGGCTCCGCCTACTTCCAGAACGTCCACGGGGAATGTGTGGGTTACGCATGAGGAGATGGAGAGCCTGGCAGCTACACCACCCACGGAGGATGACGAGGGCAGCTGGGCCCAGaCTCTCGCTTATGGAGACATGAACCACGAGTGGATCGGGAACGAGTGGTTGCCCAGCCTGGGTTTGCCTCAGTACCGCAGTTACTTCATGGAGTCGCTAGTGGACGCACGTATGCTGGACCATCTAACCAAGAAAGATCTGCGTGGTCAGCTAAAGATGGTGGACAGCTTCCACAGAAACAGTTTCCAGTGTGGGGTGATGTGTTTGAGGAGGCTAAATTATGACCGGAAAGAGCTTGAGAAAAGACGAGAGGAATCCCAGATGGAGGTTAAAGATGTTCTAGTGTGGAGTAACGAGCGTTTGATTAAATGGGTGCAGTTTATTGGGTTGAAGGAATATGCACACAACCTGCAGGAGAGTGGTGTGCATGGAGCGCTAGTGGCCCTCGATGAAACATTTGATCACAACACACTCGCCCTGCTGCTGCAGATCCCCACTCAGAGCACACAGGCAAGATCACTTCTGGAGCGAGAATACAATAACCTGCTTGCTATGGGAACAGAGCGGAAACTAGAGGAGGATGATGATAAGAATTTCAGACGAGCTCCCTCCTGGAGGAAGAAGTTTCGGCCCAAAGATGTCCGTGGCTTCAGCTCCGATACACTGCCCGCTAACTTCAGAGTGACCAACAGCACATCCACTTCACCTGCCATACAGCCAAAGAAACACCAGCTGGACGGTGAAGTCTCTGAAGACGAGGCGTCCCCTTCAGGCTGGGAGTGTAATGCACAAGAACTCTGAGATCTTGGAGGGTTTATCATGACGTCTCTGCCGTAGAGGACATATTTTAGATTTATGGATTATTCTATTTATGggacatttcatttatttagttatgtTTATGCATCATTTgcctttctcctcctccttttttcaTATAATGTTTAACTCTTTCAGGTGTAACGGAATGTATTACAGATCTGAAGTTTGTACATTtctatctaatctaatctttttttttttttttataatcttcaTCTCCTTAATTGTCCATATCTTTGGTTTGTGATGACGAAACCTGAGCTGAATCTGATTTTGTGACTGACGTGATTTTATTTCATCCCCTACTTCTGTTCTTAAAATCCTTTTGGCTGTTGATTTTATGATGTATTATGTGAATATCAGAATTGGTGCATATCTTAGAGCATTTGTTCCACAGACTGTATggaacttattattattattaatattattattattatttccccccctgtctcttttcctctttctcttgtGTGATACCAAAACATGTGATAAGCCATACACGGTAGCAACGACGAGGGCTACTTTCGGATGCATCTTTCAGCAGTCGCCTTTTCCATATGCTGAATCTCTCCATTCCTTTTCTCCTGCACATGAGACACGCATGAAGGACGTGTGCTtaggtgtgtataggtgtgtgtgtgcgcgtgtgtgtgatgggtgtgtgtgtgtgtgcatgcttgttCTCCGCTGGACCAACCTCACTGTGGCCTAAGCTCTAACTGCAGTGTCCGAAAATGGCGCGATTTGACCCTCCGGCTAAACTCTACATCTGATTAAGCCTTACTTCCTccctctgtttttatttattctgcttCTCCTTGTGTGATCATGGCCTTTTACACTTCTCATGAGTCATATCAAACATAAAGGCTGGACTGTATTATAACTTTAGGGAGTCATATTTTTGACCCAACAAACACTTCAAGTTCGTAccctttcttttgtctttttttgtggttttaagGCTCTTATGCACAATTCCAATCATGTGTTCTTCTCTCCATTGTTAAAAAATCTCTGATCTTGTAACAGAAATGCTGTACAGTCTGAGTACTTATGAACTATTTTTTATCACAGTATTATTTATTGCTTCCTTTCAATAAAAAATACTGATCCCTA

Function

symbol description
ppfia1 Orthologous to human PPFIA1 (PTPRF interacting protein alpha 1).

NR:

description
PREDICTED: liprin-alpha-1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305085.1 True 5884 mRNA 0.49 32 21495122 21574846

Neighbor

gene id symbol gene type direction distance location
LOC113526680 cttn,LOC107711361,LOC107692464 coding downstream 2641 21467974 ~ 21492481 (-)
LOC113526809 ltbp4 coding downstream 245619 21149063 ~ 21249503 (-)
esrrd LOC108263916 coding downstream 357841 21127948 ~ 21137281 (-)
blvrb blvrb,LOC107692505,LOC106612705 coding downstream 474581 21013235 ~ 21020541 (-)
LOC113526481 NA coding downstream 565172 20924978 ~ 20929950 (-)
LOC113526476 LOC108263963 coding upstream 49007 21623853 ~ 21634557 (-)
serpini1 serpini1,LOC108410963,LOC107705789,LOC107735309 coding upstream 66792 21641638 ~ 21664327 (-)
slitrk3a slitrk3,LOC107570382,LOC107705787,LOC107600237,LOC107735288 coding upstream 761914 22336760 ~ 22341441 (-)
LOC113526884 NA coding upstream 1575262 23150108 ~ 23153649 (-)
LOC113526825 LOC108263933 coding upstream 1583886 23158732 ~ 23162309 (-)
G102808 NA non-coding downstream 175570 21318140 ~ 21319552 (-)
G102809 NA non-coding downstream 182654 21309303 ~ 21312468 (-)
G102691 shkbp1 non-coding downstream 370167 21123315 ~ 21124955 (-)
G102600 LOC108264595 non-coding downstream 491342 20995525 ~ 21003780 (-)
G102458 NA non-coding downstream 808937 20638871 ~ 20686185 (-)
G103099 NA non-coding upstream 220927 21795773 ~ 21796243 (-)
G103156 LOC107737118 non-coding upstream 648739 22223585 ~ 22224021 (-)
G103158 NA non-coding upstream 649483 22224329 ~ 22224564 (-)
G103159 NA non-coding upstream 652782 22227628 ~ 22227863 (-)
G103161 NA non-coding upstream 653539 22228385 ~ 22228716 (-)
sertad3 sertad3 other downstream 482022 20995341 ~ 21013100 (-)
G102566 NA other downstream 528212 20953602 ~ 20966910 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other downstream 1078548 20395866 ~ 20416574 (-)
LOC113527007 NA other downstream 1514863 19980069 ~ 19980259 (-)
G101178 NA other downstream 3298316 18187447 ~ 18196806 (-)
si LOC108264758,LOC108431149 other upstream 656602 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 2016099 23590945 ~ 23610448 (-)
rnpepl1 rnpepl1,LOC107758061,LOC107671854,LOC107670589,LOC107602123,LOC107717622,LOC107575502 other upstream 2073838 23648684 ~ 23699707 (-)
rpl35a rpl35a,LOC107670602,LOC106612432 other upstream 2158024 23732870 ~ 23738779 (-)
sipa1l3 sipa1l3 other upstream 2905456 24480302 ~ 24574675 (-)

Expression


Co-expression Network