Item | Value |
---|---|
gene id | terb1 |
gene name | terb1 |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047600.1 |
NCBI id | CM018546.1 |
chromosome length | 31307711 |
location | 30760185 ~ 30795802 (+) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
terb1 | Predicted to be involved in homologous chromosome pairing at meiosis and meiotic attachment of telomere to nuclear envelope. Predicted to act upstream of or within meiotic cell cycle. Predicted to be located in chromosome, telomeric region and nuclear inner membrane. Orthologous to human TERB1 (telomere repeat binding bouquet formation protein 1). |
description |
---|
telomere repeats-binding bouquet formation protein 1-like |
id | name | namespace |
---|---|---|
GO:0005488 | binding | molecular_function |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_034305088.1 | True | 3595 | mRNA | 0.47 | 20 | 30760383 | 30774967 |
XM_034305089.1 | False | 3378 | mRNA | 0.48 | 21 | 30760383 | 30774967 |
XM_034305090.1 | False | 3372 | mRNA | 0.48 | 21 | 30760383 | 30774967 |
XM_034305091.1 | False | 3394 | mRNA | 0.48 | 21 | 30760383 | 30774967 |
XM_034305092.1 | False | 3275 | mRNA | 0.49 | 21 | 30760394 | 30774967 |
XM_034305094.1 | False | 3286 | mRNA | 0.49 | 21 | 30760377 | 30774967 |
XM_034305095.1 | False | 3397 | mRNA | 0.49 | 21 | 30760185 | 30774967 |
XM_034305096.1 | False | 3284 | mRNA | 0.49 | 21 | 30760382 | 30774967 |
XM_034305097.1 | False | 3592 | mRNA | 0.47 | 20 | 30760383 | 30774967 |
XM_034305098.1 | False | 3592 | mRNA | 0.47 | 20 | 30760383 | 30774967 |
XM_034305099.1 | False | 2855 | mRNA | 0.49 | 20 | 30760383 | 30795802 |
XM_034305100.1 | False | 3499 | mRNA | 0.47 | 19 | 30760383 | 30774967 |
XM_034305101.1 | False | 2847 | mRNA | 0.49 | 20 | 30760383 | 30794656 |
XM_034305102.1 | False | 2743 | mRNA | 0.49 | 20 | 30760383 | 30795794 |
XM_034305103.1 | False | 3442 | mRNA | 0.47 | 19 | 30760383 | 30774967 |
XM_034305105.1 | False | 3437 | mRNA | 0.47 | 19 | 30760383 | 30774967 |
XM_034305106.1 | False | 2849 | mRNA | 0.49 | 21 | 30760383 | 30794656 |
XM_034305107.1 | False | 2757 | mRNA | 0.49 | 21 | 30760383 | 30795702 |
XM_034305108.1 | False | 2789 | mRNA | 0.49 | 19 | 30760383 | 30773919 |
XM_034305109.1 | False | 2709 | mRNA | 0.49 | 20 | 30760383 | 30789860 |
XM_034305110.1 | False | 2703 | mRNA | 0.49 | 19 | 30760383 | 30789866 |
XM_034305111.1 | False | 3277 | mRNA | 0.46 | 18 | 30760383 | 30774967 |
XM_034305112.1 | False | 3057 | mRNA | 0.49 | 16 | 30761580 | 30774967 |
XM_034305113.1 | False | 3119 | mRNA | 0.46 | 17 | 30760383 | 30774967 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
syt1b | syt1,LOC108264166,LOC108427563 | coding | upstream | 21613 | 30733459 ~ 30738572 (+) |
si:dkey-30c15.17 | LOC108264160 | coding | upstream | 32230 | 30720852 ~ 30727955 (+) |
glipr1b | LOC108264173 | coding | upstream | 42039 | 30711773 ~ 30718146 (+) |
cers3b | LOC108264168,LOC103029792,LOC108426826 | coding | upstream | 60803 | 30689935 ~ 30699382 (+) |
LOC113526339 | LOC108264048 | coding | upstream | 72466 | 30668276 ~ 30687719 (+) |
arf5 | arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491 | coding | downstream | 12336 | 30808138 ~ 30811975 (+) |
LOC113526343 | arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 | coding | downstream | 20745 | 30816547 ~ 30825966 (+) |
pgr | pgr | coding | downstream | 179907 | 30975709 ~ 30985960 (+) |
G107629 | bbs10 | non-coding | upstream | 30528 | 30728834 ~ 30729657 (+) |
G107591 | calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 | non-coding | upstream | 197284 | 30557623 ~ 30562901 (+) |
G107382 | LOC108264175,LOC108437702 | non-coding | upstream | 304802 | 30452856 ~ 30455383 (+) |
G107387 | NA | non-coding | upstream | 330962 | 30361590 ~ 30429223 (+) |
G107381 | NA | non-coding | upstream | 403636 | 30264964 ~ 30356549 (+) |
LOC113526871 | NA | non-coding | downstream | 32274 | 30828076 ~ 30829663 (+) |
G107657 | NA | non-coding | downstream | 52157 | 30847959 ~ 30848474 (+) |
G107658 | LOC108264165 | non-coding | downstream | 54739 | 30850541 ~ 30854105 (+) |
G107659 | NA | non-coding | downstream | 58811 | 30854613 ~ 30868459 (+) |
G107660 | ppp1r37 | non-coding | downstream | 64396 | 30860198 ~ 30861847 (+) |
dnaja2b | dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 | other | upstream | 261870 | 30394260 ~ 30498315 (+) |
cmc2 | cmc2,LOC107711752 | other | upstream | 1956113 | 28799464 ~ 28804072 (+) |
def8 | def8 | other | upstream | 2598316 | 28146263 ~ 28161869 (+) |
uraha | LOC108264586,LOC108417536 | other | upstream | 2689500 | 28066882 ~ 28070685 (+) |
LOC113526832 | LOC108263905,LOC108435606,LOC105906450 | other | upstream | 2793877 | 27944790 ~ 27966308 (+) |