opa3 (opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233)


Basic Information

Item Value
gene id opa3
gene name opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25137014 ~ 25139561 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305166.1
TGACGCGCTTCCGCCAAGATGGTCGTAGGCGCTTTTCCCATCGCTAAGCTGCTCTATCTGGGCGTCCGTCAGCTCAGTAAACCGGTGGCCAACAGGATTAAAGCAGGAGCTCGGAGTAGTGAATTCTTCAAGAATTACATATGTCTTCCTCCGGCGCAGGCGTACCACTGGATCGAGATGAAAACGAAGATGAGGATAATGGGCTTCCGTGGCTCTGCCATCAAACCACTTAATGAGGACGCGGCTGCAGAGCTGGGAGCCGAGCTGCTCGGCGAGgccatcatcttcctcatcgGCGGCGGCTGTCTTGTACTGGAGTACAGCAGGCAGGCAGCGAACAGCAGGAGAAAGGAAGAGGAGCTGACCCTCACTATCAACAGCCTGCAGACGCAACTTGGAGAACTGGCCCTCACCACAGAAACACTAGACGCTCAGCTCCGTGAGGTCAACAGGCTTCTGCTGTCCTTGCCACCTGCGCCGAGTGGCAAAAACTAACGCCAAACATTAATGCGTGGCACCGAGTGGGACAGACGGACtaaatctgtatgtgtgtgacgtACTACAATACAAAGAGGCACCACCATGTATATATGACACTTGAAAAAATCCTGCCAGGTTTTGTGAGCCTGGGATCAACATGTAATCAGAATGGGCATCAGAACCTGTGGTTTTAGTGTGTGTACTCATTTTGTGGCTTGGTTCAGTATTGCATATGTGGACAGCAAAAGATTCATTTATTGGCACAATTTAACCCAAGTTAATTTGTTCTCTTATCACACTGTGCAGAAACGTTTCATATTTCTCTGTAGGACTTTTGTAGTTCATTAGACAACTGAATTCAATCTGAAAATAGTTGATGGTTGTAGCTTGGTTAAGGTCAATCGCAATAAGTATATTTGTTTCTGAATGTCTCAGAATTCAGCTCAGCTGCATTTTATTGAATCCGTTTATTCAATACTGACTGCTCGTAGCTCAGAGCAATgaggaacaggaagtgttttCACTTTCGCACTGTATGTCATTGTCTGGATTGTTTTGTGCATTTGGCCAGGTTAGTGATGCCCTTCCCCTATCTTCAGTTTCATGCTCTAAAACACAATATTTCACTCATTGTTGGTTAATTAACTAATCAAACATTTGTGTCGTTGTGTTTGGGCAAAGCAAACTGCAAATAGACTTTGGATAATTACATTAAGTAAAAGTTTGAGAAAATTGAATACATCAGACTTGTGATTGCAAGCCCCATGCCTGTGCACTGATCCTGTTTGTCTTGGAGGATGTCTGAAACGATATGTGCATAGAGATGTATATtgattattgtaaaataaaataaaatgaatgccCTATA

Function

symbol description
opa3 Acts upstream of or within locomotory behavior; musculoskeletal movement; and regulation of buoyancy. Located in mitochondrion. Is expressed in heart; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 3 and optic atrophy 3. Orthologous to human OPA3 (outer mitochondrial membrane lipid metabolism regulator OPA3).

NR:

description
optic atrophy 3 protein

GO:

id name namespace
GO:0050881 musculoskeletal movement biological_process
GO:0007626 locomotory behavior biological_process
GO:0031413 regulation of buoyancy biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K23166 OPA3; optic atrophy 3 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305166.1 True 1348 mRNA 0.44 2 25137014 25139561

Neighbor

gene id symbol gene type direction distance location
exosc5 exosc5 coding upstream 96925 25035513 ~ 25040089 (+)
b3gat1a b3gat1,LOC108263969,LOC103357231,LOC104941976,LOC106581230 coding upstream 125273 24991782 ~ 25011741 (+)
map3k10 map3k10,LOC107554498,LOC107560156,LOC107758231,LOC107756783 coding upstream 509985 24582204 ~ 24627029 (+)
six9 six9,LOC108263903,LOC108433455,LOC107554476,LOC107736748,LOC107687364,LOC107758232 coding upstream 669538 24462826 ~ 24467476 (+)
six5 LOC108264811 coding upstream 675311 24448341 ~ 24461703 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding downstream 591 25140152 ~ 25155099 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding downstream 110781 25250342 ~ 25266857 (+)
yif1b yif1b coding downstream 129332 25268893 ~ 25282220 (+)
dusp8b LOC108264845 coding downstream 627857 25767418 ~ 25777506 (+)
mob2b mob2,mob2b,LOC108264656,LOC108430083,LOC107656971,LOC107722284 coding downstream 649077 25788638 ~ 25839289 (+)
G104522 NA non-coding upstream 28048 25013112 ~ 25108966 (+)
G104554 tmem91 non-coding upstream 75714 25057875 ~ 25061300 (+)
G104520 NA non-coding upstream 124235 25011916 ~ 25012779 (+)
G104523 NA non-coding upstream 201135 24935576 ~ 24935879 (+)
G104509 NA non-coding upstream 309867 24826766 ~ 24827147 (+)
G104739 NA non-coding downstream 103239 25242800 ~ 25243305 (+)
G104748 NA non-coding downstream 103920 25243481 ~ 25243878 (+)
G104751 NA non-coding downstream 106103 25245664 ~ 25245865 (+)
LOC117597584 NA non-coding downstream 201062 25340623 ~ 25342308 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding downstream 764265 25903826 ~ 25905288 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1373969 23739502 ~ 23763045 (+)
G103830 NA other upstream 1507291 23615103 ~ 23629723 (+)
serp1 NA other upstream 1561301 23572551 ~ 23575713 (+)
LOC113526573 fchsd2,LOC107600282,LOC107594367 other upstream 1877757 23163646 ~ 23259257 (+)
relt relt other upstream 1988142 23113084 ~ 23148872 (+)
LOC113526839 NA other downstream 94064 25233625 ~ 25240213 (+)
G104781 NA other downstream 155338 25294899 ~ 25315213 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1691417 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 2071828 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2386562 27526123 ~ 27545526 (+)

Expression


Co-expression Network