LOC117597544


Basic Information

Item Value
gene id LOC117597544
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30378703 ~ 30379745 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305174.1
CGTACCCCGGGATCAGCCCGCTACTTCATGCTCTCTACAGAACTGCTGCAGATCAGCTCAGCCGAGAGAACATGCAACGTATCAGCCTGCTGTAGAACAGCCCGTTGGAGATGAGATCAGCTATTAGAGATCAACCCTCTAGAGATCTGCCCATTGGAGATCAGGCCACTAGAGAGCAGCCTGTTAGAGATCAGCCTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGGCCACTAGAGAGCAGCCTGTTAGAGATCAGCCTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGTCTGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGCCCGTTGGAGATCAGCCGCTAGAGATCAGCCCGTTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGCCCGTTGGAGATCAGCCCGTTGGAGATCAGTCCGTTGGAGATCAGGCCACTAGAGATCAGCTTTTGAAGATTAGCTTGCTAGAGATCAGCTCACTAGATCAGCTTCTGGAGATCAGTCTATTAAAGATCAGCTCTGTGGAGTTTAGGAGTTGGAGATCAGCCCAGCTGAGAGATTAGATTAGAGAGATTAGACTGCCGATGATGTAACAGTTCATCATTTTCACGGAGAGCGAGTGGTAGCGTGCTTCCCCTCCATCTCTTTcagtttgctgttgtgtttcgaTTGTGTTaatcatgtttgtgtttatttattttattttttata
>XM_034305175.1
CGTACCCCGGGATCAGCCCGCTACTTCATGCTCTCTACAGAACTGCTGCAGATCAGCTCAGCCGAGAGAACATGCAACGTATCAGCCTGCTGTAGAACAGCCCGTTGGAGATGAGATCAGCTATTAGAGATCAACCCTCTAGAGATCTGCCCATTGGAGATCAGGCCACTAGAGAGCAGCCTGTTAGAGATCAGCCTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGGCCACTAGAGAGCAGCCTGTTAGAGATCAGCCTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGTCTGTTGGAGATCAGGTTGCTAGAGATCAGCCCATTGGAGATCAGCCCGTTGGAGATCAGCCGCTAGAGATCAGCCCGTTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGGCCGCTAGAGATCAGCCCGTTGGAGATCAGCCCGTTGGAGATCAGGTTGCTAGAGATCAGCCCGTTGGAGATCAGCCCGTTGGAGATCAGCCCGTTGGAGATCAGTCCGTTGGAGATCAGGCCACTAGAGATCAGCTTTTGAAGATTAGCTTGCTAGAGATCAGCTCACTAGATCAGCTTCTGGAGATCAGTCTATTAAAGATCAGCTCTGTGGAGTTTAGGAGTTGGAGATCAGCCCAGCTGAGAGATTAGATTAGAGAGATTAGACTGCCGATGATGTAACAGTTCATCATTTTCACGGAGAGCGAGTGGTAGCGTGCTTCCCCTCCATCTCTTTcagtttgctgttgtgtttcgaTTGTGTTaatcatgtttgtgtttatttattttattttttata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305174.1 True 1013 mRNA 0.51 2 30378703 30379745
XM_034305175.1 False 998 mRNA 0.51 2 30378703 30379745

Neighbor

gene id symbol gene type direction distance location
b4galnt3b NA coding upstream 25215 30311233 ~ 30353488 (+)
LOC117597588 NA coding upstream 72909 30304632 ~ 30305794 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding upstream 93169 30272544 ~ 30285534 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding upstream 113142 30258068 ~ 30265561 (+)
ddb1 ddb1 coding upstream 252481 30106693 ~ 30126222 (+)
lmf2a lmf2,LOC108437435 coding downstream 30921 30410666 ~ 30426455 (+)
si:dkey-88e18.2 NA coding downstream 206038 30585783 ~ 30592140 (+)
vwf vwf coding downstream 248667 30628412 ~ 30666725 (+)
LOC113526339 LOC108264048 coding downstream 288531 30668276 ~ 30687719 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding downstream 310190 30689935 ~ 30699382 (+)
G107381 NA non-coding upstream 22154 30264964 ~ 30356549 (+)
G107223 NA non-coding upstream 314265 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 407610 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 455631 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 688887 29685374 ~ 29689816 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 73111 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 177878 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 349089 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 448331 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 468214 30847959 ~ 30848474 (+)
cmc2 cmc2,LOC107711752 other upstream 1574631 28799464 ~ 28804072 (+)
def8 def8 other upstream 2216834 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2308018 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2412395 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2833177 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 14515 30394260 ~ 30498315 (+)

Expression


Co-expression Network