LOC117597546 (LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252)


Basic Information

Item Value
gene id LOC117597546
gene name LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17400426 ~ 17443468 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305184.1
CCATCTTCCAGGCTTTGACTACCACAGAAATATTGAATCCACAGGTTTGCATTTGAGTCCGAGGATTACCTCAATTTAAAACTATGCCACACACACTATCTCATGTGTGGATACATTTCACCTCAGCCAGTGTGGAAGGAAAGGCTGCGTACAGTTGCAAATACTGTGTAAAGCCATATGTTAAGAATGCCACAAAGATGCAACAGCATTTAGCCAAGTGCCCAAAGTTTTCCTAGGGCTCAAAACAAGCAACCACGGCCAAGCGTTCATCTGCTTCCATTCTAAGTGAaaatgattcagattcagacaCCCTCTCTTTAGCTCCTGATCACTCTGGAATCAGAGGATTTTTTGACTCAATGGATGAACGTAGCCAGAGAAATGCTGATGAATGTTACTCGAGCAATGTATGCAACTGGCTCACCTCTGATGCTCACAGCCAATGCTTTATCTAATCATTTGCTGGATAGAGAGTTCCACAGAGTGCAAGCAAAGGTCAAGCAAACCATTGACAAAGCAGACTGCATTTCAATCATCTCTGATGGGTGGCCGTATGTCCGGGGACAAGGAATTATCAACTACATTGTCACCACCCCACAACCAGTATTCTATAAGAGCACAGACACAAAAGGacaacagacacacaggccCCTACATTGCTGATGAGCTGAAAGCAGTCATCAATGACCTTGGACCTGAGAAGGTTTTTGCACTTGTAACTGACAATGCTGCGAATATGAAGGTTGCCTGGGCACACGTGGAGGAGACCTACCCACACATAACATCAATTGGCTGTGCTGCTCATGCTCTTAATCTTCTACTTAAGGACATCATGACACTGAATACAATGAACACACTGTACAAGACAGCGAAGCAAGTAGTGAAATATGTGAAGGGCAAACAGGTAGCTTCAGCAATCTACCTCTctaagcaaaaagaaaaaaacaagaacaccACACTGAAGCTCCCCAGCATCACTCGATGGGGTGGGGTTGTCATCATGTATGACAGTCTGCTAGAGGGGAAGGAGTCTTTGCAAGAGATGGCCATATCCCAGACTGCAGCCATTGAAAGTGCCATCAAGAGAATCCTGTTGGATGATGTGTTCTGGGAAAGAGTGACTAGCAGCCTGAGAATCCTCAAACCAATAGCAGCAGCTATTGCCAAGATAGAAGGTGAAAATGCAGTCTTGTCAGATGTTAAATGTCTCTTTGCTGACCTCAGAGAAGAAAATACAAACTGTCCTGCCCACTTCCCTGTTGCTGCAAGCAAAGGAAACTGCAGTGGTCAAATTGATGGGGAAGTGCCAAGAGTTCTGCATGAAGCCAGTACACGCAGCAGCATACATGCTGGACCCAAAGTATGAGAAAAGCATACTCTCTGTTGAAGAGATCAGCAGTGCTTACAGTGTTATTACTGCCATGTCTCACCATCTGGGTCTTGATGAAAGCAAAGTTCTTGGCAGTCTGGCAAAGTACCGCACCAAGCAAGGCCTTTGGGAATGGGATGGGATATGGCAGTCGTGCCAGCACATATCTGCATGTACCTGGTGGAAAGGACTTTGTGGATCTGAGGCTCTTGCACCTGTAGCCCTTTATGATCCTTCAAATCCCACCAACATCAGCCGCCTCTGAGCGCAACTGGTCACTGATTGggaacacatacacaaaggTTCGCAACAGGCTCACGAATGCAAGGGTTGAAAAACTGGTGGTCATCTGGGCAAACTTACGGCTCTTTGAGCCTGACATAGAGCCATCCTCAACAAGGCTGGACAGTGACACCGAAGGTGAAGATGAGTCAGGTGTCGAGGAAGCGGATATGGAGGATGTTGATGAGGTCCAAGAAGAGGCCATTGAGACCTGAATGGATTGAGAGGAAAAATGCAGAATCCAGAGACTTCAGAGAAGCTTGAGAGAAAATGCTtggattttacattttgaatggGACTTTTTTTTGGAAGGGAAAGGATGCTTTCATTATACAGCATTCATTaggaaatatgtttattaattcaGCATTTATGCTTTTGTGTTGCACaatgaaaaaattaaagttCCACTTATAATTAAA
>XM_034305185.1
CCATCTTCCAGGCTTTGACTACCACAGAAATATTGAATCCACAGGTTTGCATTTGAGTCCGAGGATTACCTCAATTTAAGACTGGATGAAATGATCCTTGAAAGTGGCAGAAAGGTTCTCgtagaagaaatgaagaaaaaacagccAAATGGCATTCTCATCTCACAAATCATGGATCAAACATTCCCACTACAAAGACAAGAAATCAAAGAGGAGCCTGCTGTACAGAACATAGTTGAACGATGGCCAGCGCTTTTTACAGAGGTACAGGTGTTTGCTGAGTTTAATAGAATTGCCAGTAAGAATTTTGAGGGAGACTTTTTTGAAGCCCTGGACCAGCACACACCCCGTTTCATTGAACTCAAGTCGAAAAAAGGAACTCTTGCACAGAAACTGGCTGAGTTTGATTCAGCAAATCAGCTGGATGGCATTTCCATTGTACTTGGTGATGACTCCAGTGAATTCTACCAGACATGCTTTGATTCAGCAAGCGATGAAGCCCTAGCATCCATTACAGTTGGTGTGCTGACTGTGCTCAGTGAAAATGGTGGAGACAGTCTTCAACCGGGTCCAAGTTCAGTGCCCCTCCAGGCTATCTGTAATGCCATTGTACTTGAGGGAGGTATTGTCATGGACAATATTAAAGATTTTCCTCAGGCAGTTTGCTTGTTATTTGGGCTTACATATGCACTGCATTTCATCCAACAGTAATGCTTGGATTGGGAAGCAAGGCCCTTCCACCCAAACTgataacactgaaaaacagaTTACTCGGTTAGACCAATAAAGAGCTATCATGTTCTTAACTGTTGCATTCATTGTTGTTCTGTAaagtgacatttaaaataaatgttacaatgCATTTGA
>XM_034305186.1
CAGAAATATTGAATCCACAGGTTTGCATTTGAGTCCGAGGATTACCTCAATTTAAGATTAGAGAAGTCTTTTTGCCACACAGCAGCTGTCCTGTGGAAGGACTGGATGAAATGATCCTTGAAAGTGGCAGAAAGGTTCTCgtagaagaaatgaagaaaaaacagccAAATGGCATTCTCATCTCACAAATCATGGATCAAACATTCCCACTACAAAGACAAGAAATCAAAGAGGAGCCTGCTGTACAGAACATAGTTGAACGATGGCCAGCGCTTTTTACAGAGGTACAGGTGTTTGCTGAGTTTAATAGAATTGCCAGTAAGAATTTTGAGGGAGACTTTTTTGAAGCCCTGGACCAGCACACACCCCGTTTCATTGAACTCAAGTCGAAAAAAGGAACTCTTGCACAGAAACTGGCTGAGTTTGATTCAGCAAATCAGCTGGATGGCATTTCCATTGTACTTGGTGATGACTCCAGTGAATTCTACCAGACATGCTTTGATTCAGCAAGCGATGAAGCCCTAGCATCCATTACAGTTGGTGTGCTGACTGTGCTCAGTGAAAATGGTGGAGACAGTCTTCAACCGGGTCCAAGTTCAGTGCCCCTCCAGGCTATCTGTAATGCCATTGTACTTGAGGGAGGTATTGTCATGGACAATATTAAAGATTTTCCTCAGGCAGTTTGCTTGTTATTTGGGCTTACATATGCACTGCATTTCATCCAACAGTAATGCTTGGATTGGGAAGCAAGGCCCTTCCACCCAAACTgataacactgaaaaacagaTTACTCGGTTAGACCAATAAAGAGCTATCATGTTCTTAACTGTTGCATTCATTGTTGTTCTGTAaagtgacatttaaaataaatgttacaatgCATTTGA
>XM_034305187.1
CCATCTTCCAGGCTTTGACTACCACAGAAATATTGAATCCACAGGTTTGCATTTGAGTCCGAGGATTACCTCAATTTAAGACTGGATGAAATGATCCTTGAAAGTGGCAGAAAGGTTCTCgtagaagaaatgaagaaaaaacagccAAATGGCATTCTCATCTCACAAATCATGGATCAAACATTCCCACTACAAAGACAAGAAATCAAAGAGGAGCCTGCTGTACAGAACATAGTTGAACGATGGCCAGCGCTTTTTACAGAGGTACAGACACAAGGTGTGACTGCCTGGCGCTCTCTTGTTCTCAAAGGCATTTCCATTGTACTTGGTGATGACTCCAGTGAATTCTACCAGACATGCTTTGATTCAGCAAGCGATGAAGCCCTAGCATCCATTACAGTTGGTGTGCTGACTGTGCTCAGTGAAAATGGTGGAGACAGTCTTCAACCGGGTCCAAGTTCAGTGCCCCTCCAGGCTATCTGTAATGCCATTGTACTTGAGGGAGGTATTGTCATGGACAATATTAAAGATTTTCCTCAGGCAGTTTGCTTGTTATTTGGGCTTACATATGCACTGCATTTCATCCAACAGTAATGCTTGGATTGGGAAGCAAGGCCCTTCCACCCAAACTgataacactgaaaaacagaTTACTCGGTTAGACCAATAAAGAGCTATCATGTTCTTAACTGTTGCATTCATTGTTGTTCTGTAaagtgacatttaaaataaatgttacaatgCATTTGA
>XR_004578324.1
CCATCTTCCAGGCTTTGACTACCACAGAAATATTGAATCCACAGGTTTGCATTTGAGTCCGAGGATTACCTCAATTTAAGACTGGATGAAATGATCCTTGAAAGTGGCAGAAAGGTTCTCgtagaagaaatgaagaaaaaacagccAAATGGCATTCTCATCTCACAAATCATGGATCAAACATTCCCACTACAAAGACAAGAAATCAAAGAGGAGCCTGCTGTACAGAACATAGTTGAACGATGGCCAGCGCTTTTTACAGAGGTACAGGTGTTTGCTGAGTTTAATAGAATTGCCAGTAAGAATTTTGAGGGAGACTTTTTTGAAGCCCTGGACCAGCACACACCCCGTTTCATTGAACTCAAGTCGAAAAAAGGAACTCTTGCACAGAAACTGGCTGAGTTTGATTCAGCAAATCAGCTGGATGACACAAGGTGTGACTGCCTGGCGCTCTCTTGTTCTCAAAGGCATTTCCATTGTACTTGGTGATGACTCCAGTGAATTCTACCAGACATGCTTTGATTCAGCAAGCGATGAAGCCCTAGCATCCATTACAGTTGGTGTGCTGACTGTGCTCAGTGAAAATGGTGGAGACAGTCTTCAACCGGGTCCAAGTTCAGTGCCCCTCCAGGCTATCTGTAATGCCATTGTACTTGAGGGAGGTATTGTCATGGACAATATTAAAGATTTTCCTCAGGCAGTTTGCTTGTTATTTGGGCTTACATATGCACTGCATTTCATCCAACAGTAATGCTTGGATTGGGAAGCAAGGCCCTTCCACCCAAACTgataacactgaaaaacagaTTACTCGGTTAGACCAATAAAGAGCTATCATGTTCTTAACTGTTGCATTCATTGTTGTTCTGTAaagtgacatttaaaataaatgttacaatgCATTTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107707548

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305184.1 True 2073 mRNA 0.45 2 17400426 17403388
XM_034305185.1 False 867 mRNA 0.42 5 17400426 17443468
XM_034305186.1 False 887 mRNA 0.42 6 17400450 17443468
XM_034305187.1 False 750 mRNA 0.42 4 17400426 17443468
XR_004578324.1 False 907 misc_RNA 0.42 5 17400426 17443468

Neighbor

gene id symbol gene type direction distance location
slc28a1 LOC108263923 coding upstream 22086 17363125 ~ 17378340 (+)
blm blm coding upstream 334607 17041357 ~ 17065819 (+)
ppp1r15b LOC108263894 coding upstream 416450 16978935 ~ 16983976 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 471784 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 584154 16764695 ~ 16816272 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 86966 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 138415 17581883 ~ 17602174 (+)
reln reln coding downstream 318049 17761517 ~ 18188484 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding downstream 780593 18224061 ~ 18241609 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 1238049 18681517 ~ 18732814 (+)
G100544 NA non-coding upstream 224056 17176158 ~ 17176370 (+)
G100533 NA non-coding upstream 245455 17154706 ~ 17154971 (+)
G100532 NA non-coding upstream 248194 17150953 ~ 17152232 (+)
G100495 NA non-coding upstream 309720 17087954 ~ 17090706 (+)
LOC117597540 NA non-coding upstream 361150 17038051 ~ 17039276 (+)
G100846 NA non-coding downstream 546934 17990402 ~ 18068569 (+)
G101183 NA non-coding downstream 761624 18205092 ~ 18205814 (+)
LOC117597602 NA non-coding downstream 818255 18261723 ~ 18277823 (+)
LOC117597601 NA non-coding downstream 905656 18349124 ~ 18358091 (+)
G101387 NA non-coding downstream 1093433 18536901 ~ 18537109 (+)
rgma NA other upstream 719633 16657601 ~ 16680793 (+)
G100345 NA other upstream 799359 16600257 ~ 16601067 (+)
G100306 NA other upstream 1050639 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 2054280 15300482 ~ 15346146 (+)
G99341 synm other upstream 2875946 14520801 ~ 14524480 (+)
LOC113539654 NA other downstream 46078 17489546 ~ 17493092 (+)
G101403 NA other downstream 1107978 18551446 ~ 18551724 (+)
G101419 NA other downstream 1155246 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1294875 18738343 ~ 18739998 (+)
G101466 NA other downstream 1350167 18793635 ~ 18794273 (+)

Expression


Co-expression Network