Gene
RNA
| Item | Value |
|---|---|
| gene id | mical3a |
| gene name | mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047600.1 |
| NCBI id | CM018546.1 |
| chromosome length | 31307711 |
| location | 10295851 ~ 10398875 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| mical3a | Predicted to enable FAD binding activity; actin binding activity; and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen. Predicted to be involved in actin filament depolymerization. Predicted to act upstream of or within exocytosis. Predicted to be located in nucleus. Is expressed in several structures, including cardiovascular system; pectoral fin; pectoral fin bud; proctodeum; and retina. Orthologous to human MICAL3 (microtubule associated monooxygenase, calponin and LIM domain containing 3). |
| description |
|---|
| F-actin-monooxygenase MICAL3 isoform X1 |
| id | description |
|---|---|
| K19947 | MICAL; F-actin monooxygenase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_034305226.1 | False | 9484 | mRNA | 0.49 | 46 | 10295851 | 10373475 |
| XM_034305227.1 | True | 9697 | mRNA | 0.49 | 48 | 10295851 | 10398875 |
| XM_034305228.1 | False | 9578 | mRNA | 0.49 | 47 | 10295851 | 10398875 |
| XM_034305229.1 | False | 9023 | mRNA | 0.49 | 45 | 10295851 | 10348730 |
| XM_034305230.1 | False | 9023 | mRNA | 0.49 | 45 | 10295851 | 10348730 |
| XM_034305231.1 | False | 9014 | mRNA | 0.49 | 45 | 10295851 | 10348730 |
| XM_034305232.1 | False | 8999 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305233.1 | False | 8996 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305234.1 | False | 8990 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305235.1 | False | 8975 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305236.1 | False | 8975 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305237.1 | False | 8963 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305238.1 | False | 8945 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305239.1 | False | 8936 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305240.1 | False | 8924 | mRNA | 0.49 | 43 | 10295851 | 10348730 |
| XM_034305242.1 | False | 8924 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305243.1 | False | 8918 | mRNA | 0.49 | 44 | 10295851 | 10348730 |
| XM_034305244.1 | False | 8873 | mRNA | 0.49 | 42 | 10295851 | 10348730 |
| XM_034305245.1 | False | 8819 | mRNA | 0.49 | 43 | 10295851 | 10348730 |
| XM_034305246.1 | False | 8795 | mRNA | 0.49 | 43 | 10295851 | 10348730 |
| XM_034305247.1 | False | 8735 | mRNA | 0.49 | 42 | 10295851 | 10348730 |
| XM_034305248.1 | False | 8732 | mRNA | 0.49 | 42 | 10295851 | 10348730 |
| XM_034305249.1 | False | 6819 | mRNA | 0.52 | 42 | 10301548 | 10348730 |
| XM_034305250.1 | False | 8528 | mRNA | 0.49 | 40 | 10295851 | 10348730 |
| XM_034305251.1 | False | 8411 | mRNA | 0.49 | 39 | 10295851 | 10348730 |
| XM_034305252.1 | False | 8309 | mRNA | 0.49 | 38 | 10295851 | 10348730 |
| XM_034305253.1 | False | 8306 | mRNA | 0.49 | 38 | 10295851 | 10348730 |
| XM_034305254.1 | False | 8204 | mRNA | 0.49 | 37 | 10295851 | 10348730 |
| XM_034305255.1 | False | 8201 | mRNA | 0.49 | 37 | 10295851 | 10348730 |
| XM_034305256.1 | False | 8174 | mRNA | 0.49 | 36 | 10295851 | 10348730 |
| XM_034305258.1 | False | 9631 | mRNA | 0.49 | 48 | 10295851 | 10373475 |
| XM_034305259.1 | False | 8285 | mRNA | 0.48 | 33 | 10295851 | 10373473 |
| XM_034305260.1 | False | 8477 | mRNA | 0.48 | 34 | 10295851 | 10373473 |
| XM_034305261.1 | False | 8579 | mRNA | 0.48 | 36 | 10295851 | 10373473 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113534539 | LOC108264794,LOC108414180,LOC107559271,LOC107738440,LOC107673148,LOC556054,LOC107670367 | coding | downstream | 277168 | 9997813 ~ 10018683 (-) |
| bicd1a | bicd1,LOC107722484 | coding | downstream | 563073 | 9694077 ~ 9732778 (-) |
| fgd4a | fgd4 | coding | downstream | 603766 | 9625063 ~ 9692085 (-) |
| tbxas1 | tbxas1 | coding | downstream | 881464 | 9349891 ~ 9414387 (-) |
| LOC113534316 | LOC108264773,LOC108411498,LOC103144378,LOC103466211,LOC104959708,LOC102232877,LOC101063805,LOC102203720 | coding | downstream | 1075647 | 9217244 ~ 9220204 (-) |
| wfdc1 | wfdc1,LOC102778323,LOC107553961 | coding | upstream | 26865 | 10425740 ~ 10439871 (-) |
| si:dkey-246g23.4 | NA | coding | upstream | 50111 | 10448986 ~ 10453158 (-) |
| kcng4a | kcng4,kcng4a,LOC107553964,LOC107738382,LOC107749318,LOC107670163,LOC107684667 | coding | upstream | 78311 | 10477186 ~ 10505123 (-) |
| zgc:173742 | zgc:173742,LOC108264272,LOC108415671,LOC107684664,LOC107749320,LOC107553995 | coding | upstream | 188047 | 10586922 ~ 10642050 (-) |
| cdh13 | cdh13,LOC107684661,LOC107722459,LOC107738387 | coding | upstream | 307996 | 10706871 ~ 11042272 (-) |
| G97054 | NA | non-coding | downstream | 200493 | 10071553 ~ 10095358 (-) |
| G96840 | NA | non-coding | downstream | 411396 | 9819387 ~ 9884455 (-) |
| G96677 | hipk2 | non-coding | downstream | 791910 | 9417586 ~ 9503941 (-) |
| G96679 | NA | non-coding | downstream | 878437 | 9417022 ~ 9417414 (-) |
| G96484 | NA | non-coding | downstream | 957067 | 9326681 ~ 9338784 (-) |
| G97204 | NA | non-coding | upstream | 80192 | 10479067 ~ 10479287 (-) |
| G97224 | NA | non-coding | upstream | 120222 | 10519097 ~ 10519305 (-) |
| G97225 | NA | non-coding | upstream | 121920 | 10520795 ~ 10520997 (-) |
| G97246 | mlycd | non-coding | upstream | 258317 | 10657192 ~ 10661052 (-) |
| G97601 | NA | non-coding | upstream | 788620 | 11187495 ~ 11188023 (-) |
| ttc38 | ttc38,LOC107722483,LOC107673144,LOC107587045 | other | downstream | 1028 | 10266978 ~ 10294823 (-) |
| tmtc2b | LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 | other | downstream | 377370 | 9822233 ~ 9918481 (-) |
| LOC113534661 | NA | other | downstream | 523831 | 9750882 ~ 9772020 (-) |
| cotl1 | cotl1,LOC107559813,LOC107722478 | other | downstream | 1080036 | 9174655 ~ 9215815 (-) |
| LOC113534821 | LOC108264660,LOC108443050 | other | downstream | 1817514 | 8395812 ~ 8478337 (-) |
| si:dkey-246g23.2 | pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 | other | upstream | 128235 | 10527110 ~ 10581902 (-) |
| pdf,spata2l | other | upstream | 773812 | 11172687 ~ 11179608 (-) | |
| arntl2 | arntl2,LOC107749276,LOC107686234 | other | upstream | 1187182 | 11586057 ~ 11610964 (-) |
| plekhg7 | plekhg7,LOC107583891 | other | upstream | 1353650 | 11752525 ~ 11769986 (-) |
| sspn | sspn | other | upstream | 1472033 | 11870908 ~ 11878204 (-) |
