LOC113526591


Basic Information

Item Value
gene id LOC113526591
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 26636409 ~ 26644829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305272.1
actttcccctgaaaagagctGGCAAGACTGAGAGTGAGGGCGGACAGAAACACCGCCTCCTCGgtcactacacacaccacaggaaAAGCCTGAGAACAGCAGCAGAGTCGGAACACACACTAAAGACAAACCGACTTCAGCACCAAGATTCTGTGTGATGCACATGACGATGACTTAAAAGATGTCTACTGCCATTTTGAAAATCGTCATCACCCTGACCTTGACTGGCTCTATCCACTGCGGTAAGGTCCTGGTGTTCCCTCATGATGGCAGCCACTGGGTTAACATGAATGTATTGATACAAGAGCTGCACAATAGAGGTCACCATGTCACGGTCATCCGCGCAGCTGATAGCTGGTACATCAAAGAGCAGTCACCCTACTACCACTCCATAACCGTTGACTTCTCAGTGGGGGGAGACGAAGCTTTCTTCAAAACCTTTGTCTCCAGACAGCTACAGATTCGACGAGAAAGAAGCTCACTTTGGGCTCAGTTCAGTCTGGACATGGAGCTGGCAGACAAGTTTTCCGAAATGCACAGAAAGATATGTGAAATGGTCATCCACATAATCGAGGATCCCAAATTGATCAATTCCATCAGAGAAGCGGAGTATGACGTGATGCTGACAGACCCTGCGAATGGTGGAGGAGTCGTGCTTGCACATTATCTGCGCTTACCGCTGGTTTTTAACGTCCGCTGGACGGTACATGGAGAGGCACACTTTGCAATTGCGCCTTCGCCCTTATCGTACGTTCCCTTTCCTTTATCCCTGTTAACAGATAGGATGACTTTTTTTCAAAGGGTATATAACATGATCTTCTACCTCAGACTCTTCTTTTACAAGCGCATTGTAGGTCCTCATTACAGTGCTTTGTGTAACCGCTACTTTGGTCCAGATGTGGACTATTTCGAATTATTCCAGGCAGCCGATATCTGGCTTATGAGAGTCGATTTTGTGTTTGAGTTCCCTCGCCCGACGATGCCCAACTTCGTTTACATGAGTTGCTTCCAATGCAAACCATCAAAAGCCCTTCCGGATGATTTGGAGGACTTTGTGGAAAGTTCTGGAGAGCACGGCATTGTCATTGTATCATTGGGAACGCTGGTTGGACAGCTTCCTGATGATATAGCCGACGAAATGGCTGCCGCTCTTGCTAAGCTCCCTCAAAAAGTGATCTGGCGATACTCAGGGAAGAAACCATCCACTCTCGGGAACAACACCATACTCAGGGACTGGTTGCCACAGAATGATCTTCTTGGACATCCCAAGACAAAGGTTTTTGTGAGCCATGGAGGAACAAATGGGATTTTAGAAGCTATTTATCACAGTACTCCAATCGTTGGCCTACCTCTGGTTTTTGATCAACATGACAATCTCTCGAGGATGAAATATAAAGGTGTAGCACAGGTCATAGATATAGCCACTTTAAATCAGAATGTGTTTCTTGAGGCTATACAGGAAGTCATAAACGAGCCTTCCTACAGTATAAACATGAAGAGGCTGTCCAGGCTTCTTAGAGACACACCTGTACAACCTCTGGATAATGCCATGTTCTGGACTGAGTTTGTTATGAGACACAAAGGTGCTGCTCATCTACGAACAGATTCTTACAAAATGCCTTGGTACGTTTACCACAGTGTCGATGTTATAGCGTTTTTACTCTTAGTTGCATCAGGTACAATTTTCCTAATCTTTGCTGTAATCCGATACATATGCTGCAGGGCATGTaggaaaaaaagagtaaaacaaGACTGATTCTATACAGCAAAACAGTCTTGTTTTCAAATACCACTAAATACCAAGTTAGGAATTAGTTAGGAATTAGGAAAATTGCATTCATGGACAATGAACAAAGTGCAGAGGCCAAATTTTTAATCAGTACTACACTGGTGCCTGTAAGTAGATGAGGTTTTACCTAATCAAGTGGTGAAAATCTATTGTTGTGTATTCAGTCTTGTTTGAGTGAAAGGAAAAATATGTTACTTATGCCACTAAGAACATGTAAAAGCAGTAAAGAACATTTTGCTGTGTACATCTTTTTATtagagagttaaaaaaaaaacagacaatagTAGATCTGATGTCATGGCAAATTGGTATAACTTGTGACATTTATATGCCAATTAAGAGATCAGTAAGATTTATGCAGCTTTATTTAAGTAATTAGAtggaaaaatctttttttttcattgtaaataGTCAAATTTATATATCTTATACCGCAGTGCTGTTGCATTCTCAAATCTTATTGGTCAAaagatgttgattttttttttttttgacaaatgtataaattttcaaatcactggtttatattttgtaataatgcactcattctaatactatAGTTTCCATAGTAAGAACTTATACAGAGACTTGATAATATGATGGAGTTCTCtttgtgaggagatgtttatttagcattttttggaaggagtctccagttttagAGCTCtgtaacagtcggaggtaaagctgtaacttttaggAACATGATGAGCTGCAGTTTTTTGgctaattaacttcaagagagagaaaaaaaattgtctggTGCTGCAATAATGTAAGTGATCACTTTTTTTGctaatgttcattcattcattcattcattaattcattcattcatctgcaagcgcattatcctggtcagggtcgtggtagatctggagcctatccggAGCCTAAATGTCAACAAAGTCCAATccggagaattcaccctggattgGACTTTGTtgacatttaacattaaatgtaacaataaatgggtaaaaagtaagatgtgttattctttaataagaaAACATTGTTAGCATTGGTAAATtcctgtggtatgagaggaatataaccctttgggatgtggtgttAATGGtcatgtattattccttacatggtACAAATCTTTTTTTACTTACTTGTACTTGTGACTCAAAGACTAACATTTGTAGTACTTTGTGCAGAACGGCAATGGCTCTGGAATCTTACGAATTCTTttgtaaatagatttttaatttttttttctgctacaaCTTGTAAGGAATTTTTCACTTTATACCAAGATATAAAGATCCTGTTACCTTCACATTgtttataaaactttatataaGGAATACACTGCCATAGACAAATACAGTGAGCAGATACTGTAGGTAGAGACATGTCTAGCATTACTGGTGTGACATTTTTGCATTAtgggtgtgatgtgtgtgaatcAGCCTTTCACAATCTGTAGAAATCATGTGATTGTGGTTAACTGTTGTATGAAACGACTGCAATAGGAATTAAGAATAAACTAAGAATGAAATAAGAATCCTCTCAAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00699 UGT; glucuronosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305272.1 True 3318 mRNA 0.39 2 26636409 26644829

Neighbor

gene id symbol gene type direction distance location
chrna5 chrna5,LOC108440259,LOC105888947,LOC107738537 coding upstream 1912 26622446 ~ 26634497 (+)
LOC113526907 LOC108264702 coding upstream 14267 26614822 ~ 26622142 (+)
chrna3 LOC108264698,LOC108414155,LOC108240269,LOC107381279,LOC103462694,LOC106937773 coding upstream 57865 26568595 ~ 26578544 (+)
chrnb4 chrnb4,LOC108263987,LOC108414152,LOC107668698,LOC106562134,LOC107711347 coding upstream 71198 26554468 ~ 26565211 (+)
ubl7b LOC108264398 coding upstream 324907 26303120 ~ 26311502 (+)
nptnb nptn,LOC108431650,LOC107715830 coding downstream 3722 26648551 ~ 26681425 (+)
hcn4 hcn4,LOC108263998,LOC102793391 coding downstream 50054 26694883 ~ 26789255 (+)
dhdh.2 dhdh,LOC108431994 coding downstream 176338 26821167 ~ 26827022 (+)
LOC113526325 parp6 coding downstream 206133 26850962 ~ 26875332 (+)
si:dkey-205h23.2 celf6,LOC106535005 coding downstream 268499 26913328 ~ 27063061 (+)
G105479 LOC108264702 non-coding upstream 25149 26610941 ~ 26611260 (+)
G105449 NA non-coding upstream 104321 26531335 ~ 26532088 (+)
G105450 NA non-coding upstream 108602 26525920 ~ 26527807 (+)
G105446 NA non-coding upstream 119629 26513436 ~ 26516780 (+)
G105320 NA non-coding upstream 312909 26320009 ~ 26323500 (+)
G105490 NA non-coding downstream 46605 26691434 ~ 26691677 (+)
G105548 NA non-coding downstream 53149 26697978 ~ 26698178 (+)
G105733 NA non-coding downstream 418526 27063355 ~ 27063862 (+)
G105732 NA non-coding downstream 419862 27064691 ~ 27066023 (+)
G105841 NA non-coding downstream 484519 27129348 ~ 27129629 (+)
G104781 NA other upstream 1321196 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 1396196 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 2873364 23739502 ~ 23763045 (+)
G103830 NA other upstream 3006686 23615103 ~ 23629723 (+)
serp1 NA other upstream 3060696 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 186149 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 566560 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 881294 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 1299961 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 1422053 28066882 ~ 28070685 (+)

Expression


Co-expression Network