mbtps1 (mbtps1,LOC107672278,LOC107694940,LOC107596929)


Basic Information

Item Value
gene id mbtps1
gene name mbtps1,LOC107672278,LOC107694940,LOC107596929
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 14988788 ~ 15015137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305368.1
GAACCGGAGTATGGACACCATGACACTAACAGCGGTGTGGCTCCTCGTGGTTGTAGCCCTGCTGGCGGGTATGTGCCCCTGGCTGGCACTGAGGAAGAGCGAACCATCTTCAGCTCTTCTTTCTCCACGGACGGGTTCTCGAGCTCGAACTGCTCTCAGCTCACCCTCAAACTAGACTTCTCCTCCAAAGTAGTGGAGCATGAGTATATAGTAGCATTTAATGGGTACTTCACGGCAAAGGCACGCAGTCACTTCATCAGCAGTGCCCTGCAGAACGCCAAGGCAGTGAACTGGAGAATTGTGCGACGTGAAAACCCGGCCAGCGACTACCCCAGCGACTTCGAGGTGGTGCAAATCCGACAGGATGCACACAGCAGTCTGCTTACGCTGCAGGACCACCCCTACATCAAGAGAGTCACCCCCCAGCGCAAGGTCTTCCGTACACTCAAACTGCTCAACGCTGGAGGTGATAGCAGCTCCTCCTGTAATGACACACGCTGGACACAGAAGTGGCAGTCATGGCAGTCATCTCGGCCACTGAGGAGGACTAGTCTGTCTCTGGGCTCTGGGTTCTGGCACGCCACAGGTCGCCACTCGAGCCGTCGCCTGCTCAGGGCCATCCCCCGCCACGTGGCCCAAATCCTGCAAGCTGATGTGCTGTGGCAGATGGGCCACACAGGCTCGGGAGTGAAGGTGGCTGTATTTGACACTGGACTTAGTGAAAAGCACCCACATTTTAAGAATGTTAAAGAGAGGACCAACTGGACCAATGAGAAGACACTGGATGATGGTTTGGGCCATGGCACCTTTGTGGCTGGAGTTATAGCCAGCATGAGGGAGTGTCAGGGCTTTGCTCCTGACTCTGAGTTGCACATTTTCAGAGTCTTCACCAATAGTCAGGTGTCCTACACTTCTTGGTTCCTGGATGCCTTCAACTATGCCATCCTGAAGAAGATCAATGTCTTGAACCTCAGCATTGGTGGGCCAGACTTCATGGACCATCCATTTGTGGATAAGGTTTGGGAGCTCACTGCAAATGGGGTTATCATGGTGTCTGCTATTGGGAATGATGGCCCTCTCTATGGTACTCTAAATAACCCTGCTGATCAAATGGATGTGATTGGGGTCGGAGGAATTGATTTTGAGGACAACATTGCCCGGTTCTCCTCTCGGGGCATGACAACATGGGAGTTGCCAGGTGGCTATGGCAGGGTGAAGCCTGACATTGTGACATATGGCTCTGGAGTCCGTGGCTCTGGGCTGAAAGAGGGCTGCCGCTCTCTGTCTGGCACCAGCGTGGCCTCTCCCGTGGTGGCCGGCGCAGTCACTCTTCTTGCCAGTACGGTGTTGAATCGAGAGCTGGTAAACCCAGCCAGTATGAAGCAGGCTCTGATTGCATCGGCTCGCAGGCTCCCTGGAGTCAACATGTTTGAACAGGGCCATGGCAAACTGGACCTGCTCCGAGCGTACCAGATCCTCAACAGCTACAGACCCCAAGCCagTCTCAGTCCAAGCTACATAGACCTGACAGAATGCCCCTATATGTGGCCCTACTGCTCCCAGCCCATTTACTATGGCGGCATGCCGACGATCGTCAATGTAACCATCCTGAATGGCATGGGTGTGACTGGCAGGATTGTGGACAAGCCCATCTGGCAGCCTTATCTGCCCCAGAATGGGGATCATATTGATGTGGCTGTGTCTTACTCGCCTGTGCTGTGGCCGTGGGCTGGCTACCTGGCTGTCTCTATATCTGTGGCCAAGAAAGCGGCATCCTGGGAGGGAATCGCTCAGGGTCATGTGATGCTCACTGTGGCCTCACCTGCAGAGAATGATtcAGCAGTAGGAGGGGAAATAACCTCCACAGTGAAGCTGCCGGTGAAGGTGAAGATCGTGCCCACACCTCCTCGCAGTAAGAGGGTGTTATGGGACCAGTATCACAACCTGCGCTACCCACCTGGCTATTTTCCCCGAGATAACCTGCGCATGAAGAATGACCCGCTCGACTGGAATGGTGATCATATCCATACCAACTTTAGAGATATGTACCAGCACCTCAGAAGTATGGGGTACTTTGTTGAAGTTTTGGGTTCACCCATTACATGTTTCGATGCCAGTCAGTATGGGACTCTGTTGATGGTGGACAGTGAGGAGGAGTATTTCCCAGAGGAGATCACTAAGCTGCGAAGGGACATAGATAATGGTCTGTCGCTCATCATCTTCAGTGATTGGTACAACACCTCAGTTATGAGAAAAGTGAAGTTCTACGATGAGAACACCAGGCAATGGTGGATGCCGGACACAGGGGGCGCCAATGTCCCAGCATTGAATGACCTCATCTCTGTATGGGGTATGGCCTTCAGTGATGGACTGTACGAGGGAGACTTCACAATGGCAGATCATGACATGTACTATGCCTCAGGCTGTAGCATTTCACGTTTTCCAGAGGATGGGCTCGTTATTGCACAAACCCTAAAGGATCAAGGACTAGAGGTGTTAAAACAAGAGACTGCGGTGGTGGATAACGTTCCAGTGCTTGGATTATACCAGACACCCTCAGAAGGAGGAGGTCGCATTGCACTGTATGGAGACTCTAACTGCATAGATGACAGTCACAGGCAGAAAGACTGTTTCTGGCTTCTTGATGCTCTGCTGCAGTACACATCTTACGGTGTGACTTCACCTAGCTTCCTCCACTCTCAAAACAAAGTGCCATCTCCTACAGGCAATGACAGACCTCTGCCAGAGAGGCTGGAGGgtAATCACCTCTACCGCTACTCAAAAGTGCTAGAGGCCCACCTGGGTGACCCAAAGCCGCGCCCTCTACCTGCCTGCCCTCACTTGTCTTGGGCCAAACCTCAGCCACTTAATGAAACGGCTCCCAGTAACCTGTGGAAACACCAGAAGCTGCTTTCTGTGGACATGGACAAGGTGGTGCTACCCAATGTAAGGTCATATCGACCCCAGGTCAGACCTCTGTCACCAGGGGAGAGTGAAACCTGGGACATTCCTGGAGGTATAATGCCAGGTCGCTATAATCAGGAAGTGGGTCAGACCATTCCCATGTTTGCTTTTCTGGGTGCCATGGTCGTGTTGTCCTTCTTCGTGGTACAGCTGACTAAGTCCAGGAGCAAGCCAAAGCGCAGGAAACCACGCATTAAAAGGCCCACCTATctccaacagcagcagcagctccctCACACAGGCAAAAACCCTACAGTGTGACATTGCCTTGCTCTGAAACCTTAACACACTGAGACTTTAAGGTGGTGGATTAAATTTGCTACAGACTAAATTGTCATGTGACACACAGTGCTTATGAAACTGCCATCTTGACCTCCATTTGTGGGGTTTTCCTATGGACATCGATGTTCCTTTCTCCAAAAGAAACTTTCATTTCAATGACCAAAatcaacctttttttaaatttattgacAATGTTTGATGATTTCAGCCCTTGATATGTATGTCAAAATGGACAGCcatgaaaaaaacaatttattacaCAAAGTGTAAAGTTCtggatatttttaaataccttTTTCATACCTCTTTGTCTTCATAGTCAATATTTGGGATTGAGTCATTTTGTTCTTTAtgtcctgtttgtgtttttatataataaGCTTCTGATAATTTTGTAAATAGCAATCATGATTTTTCACCTTTGTTGGTGGGCTAGCATTAAAAATGTCATCTGCAATAAAGCATTACACCTGC

Function

symbol description
mbtps1 Predicted to enable serine-type endopeptidase activity. Acts upstream of or within cartilage development; lipid metabolic process; and liver development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including axial chorda mesoderm; axis; margin; pleuroperitoneal region; and tail bud. Human ortholog(s) of this gene implicated in spondyloepiphyseal dysplasia Kondo-Fu type. Orthologous to human MBTPS1 (membrane bound transcription factor peptidase, site 1).

NR:

description
membrane-bound transcription factor site-1 protease

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0051216 cartilage development biological_process
GO:0006508 proteolysis biological_process
GO:0001889 liver development biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K08653 MBTPS1; membrane-bound transcription factor site-1 protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305368.1 True 3720 mRNA 0.50 22 14988788 15015137

Neighbor

gene id symbol gene type direction distance location
slc38a8a slc38a8 coding downstream 10638 14969784 ~ 14978150 (-)
pnp6 LOC108264829,LOC108424368,LOC103033869 coding downstream 207235 14771280 ~ 14781553 (-)
calb2a calb2,calb2a,LOC108264862,LOC107672188 coding downstream 228294 14748622 ~ 14760494 (-)
got2a got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360 coding downstream 246108 14735413 ~ 14742680 (-)
si:dkey-12e7.4 LOC108264682,LOC108424351,LOC106560815,LOC107578981 coding downstream 253633 14730120 ~ 14735155 (-)
pskh1 pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554 coding upstream 3821 15018958 ~ 15026868 (-)
nrn1la nrn1l coding upstream 28161 15043298 ~ 15072495 (-)
edc4 edc4,LOC107733561,LOC107726309 coding upstream 60737 15075874 ~ 15105110 (-)
nutf2 nutf2 coding upstream 90178 15105315 ~ 15119718 (-)
tsnaxip1 tsnaxip1 coding upstream 105910 15121047 ~ 15132206 (-)
G99493 NA non-coding downstream 339795 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 385316 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 452778 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 469004 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 535681 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 134266 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 145066 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 156174 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 161038 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 282468 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 641780 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1426214 13550680 ~ 13562574 (-)
G98770 NA other downstream 1936477 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2564810 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2583507 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 332029 15347166 ~ 15357563 (-)
G101178 NA other upstream 3172310 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4964932 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5380729 20395866 ~ 20416574 (-)
G102566 NA other upstream 5938465 20953602 ~ 20966910 (-)

Expression


Co-expression Network