LOC113534692


Basic Information

Item Value
gene id LOC113534692
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16259445 ~ 16260173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305369.1
atgagcagatcctttctttctccaaactttGGCTTTTCCATCACTTCGGTGGAGGCCGTTGATATGCCTGCTGTTGACTTGACTGACTTGACTGATTTCACTGTGTCCTATGCGATAACTGAACCTAGTATCTATCCTGCTGTGGAGCCTTTGGATTCCACCTCCCATATCATGGATGCCACCATTGTACAAAGCGAGCACTACGAAGAGGCCCGTGTTGTACAGAACATCCTTTTGGACATCCTTCAGGAAATTATTGCTTTCATGGGTATGGATGAATTATCTGAGGAGGATAAGCTGACTGTCACTTGTACCCATATGATTCAGATTCCGGCTCATTTCTTCACTGGACACTTGGGCAAGTTGGTACCCCTTAAGAATACAATTAAAGAATTCATGTGCATGCTTGCACAAGAGTATGATGAATTTCCTGAGCAGACATTCTACATGGTGGGTCCCACTGAAGTTCAGAAGACAGAGATCCTGTCTGAGGAACATTCATAA

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0016020 membrane cellular_component
GO:0016817 hydrolase activity, acting on acid anhydrides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305369.1 True 504 mRNA 0.44 3 16259445 16260173

Neighbor

gene id symbol gene type direction distance location
mctp2a LOC108264697 coding upstream 403333 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 450329 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 587111 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 606158 15613280 ~ 15653287 (+)
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 657541 15522791 ~ 15601904 (+)
LOC113534621 NA coding downstream 240587 16500760 ~ 16510979 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 504522 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 578702 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 718762 16978935 ~ 16983976 (+)
blm blm coding downstream 781184 17041357 ~ 17065819 (+)
G100296 NA non-coding upstream 51031 16208165 ~ 16208414 (+)
G100292 NA non-coding upstream 57375 16201861 ~ 16202070 (+)
G100285 NA non-coding upstream 61612 16197618 ~ 16197833 (+)
G100229 NA non-coding upstream 74126 16180040 ~ 16185319 (+)
LOC113534481 NA non-coding upstream 174499 16081882 ~ 16084946 (+)
G100301 NA non-coding downstream 58100 16318273 ~ 16318723 (+)
G100340 NA non-coding downstream 323448 16583621 ~ 16583947 (+)
G100341 NA non-coding downstream 324171 16584344 ~ 16584820 (+)
G100355 NA non-coding downstream 409214 16669387 ~ 16670025 (+)
LOC117597522 NA non-coding downstream 490834 16751007 ~ 16755979 (+)
carmil2 carmil2,rltpr other upstream 913299 15300482 ~ 15346146 (+)
G99341 synm other upstream 1734965 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2216993 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 2303094 13932539 ~ 13956351 (+)
G98972 NA other upstream 2470055 13785095 ~ 13789390 (+)
G100306 NA other downstream 89284 16349457 ~ 16349787 (+)
G100345 NA other downstream 340084 16600257 ~ 16601067 (+)
rgma NA other downstream 397428 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1140253 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1229373 17489546 ~ 17493092 (+)

Expression


Co-expression Network