lonp2 (lonp2,LOC107686284)


Basic Information

Item Value
gene id lonp2
gene name lonp2,LOC107686284
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 13374859 ~ 13395693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305370.1
TGTGAGGCATTGAACTAATTTGTGAAATTGGATTATAGTTATGGTTTCCTATGTTTTGCATTACTGGTGACGCTATATGCATTTTTCTGTCAGCACAGAATGAACACTAGGAAACAGTATGAGCAGGAGGAAACACTTTCCTCCTCATTTACAAACGATACAATGCCGTGTTTTGATAAATAATCCTCCGGGTAACGTTTCTGTCATTCTGAAATTCAGACACAAGTGGGCGTTACCCGGAAGTTACAGTTTGTCCCAGTGTGCCTGCCGTAGTTCACGTTTTTTATTTTGATTCGCCTTCGCTGCTCACCCGACCAGCTGTCACTGATTGTTTATCCAAAGAAAAatcctgtttgtgttttgtaattAAAGTTCCAGTAAACACTTGGCGATGTCTTCCGGTGGCGGAATCCAGATTCCCAGCCGCTTGCCTTTACTATTAACTCATGAAGGGGTTCTTTTGCCGGGCTCGACGATGCGAATTAGCGTCGACTCTTCGAGAAACATGCAGCTGGTGAAGAGCAGACTGCTGAAGGGAACCTCACTGAAGAGCACCATCATAGGAGTGATTCCCAACACCAGAGACCCGGAGCAGGACAGCGACGAGCTCCCCGCTCTACACGGCGTTGGCACGGCAGGCCTGGCAGTCCAGGTAGTGGGCAGTAACTGGCCAAAGCCGCACTACACACTGCTCATCACGGGTTTGTGCCGCTTCCGTGTGACGCAGCTGCTGAGGGAGAGACCCTTCCCCGTGGCTGTGGTGGAGCAGCTGGACAAGCTGGAGCAGTACACAGAGGGAGAGCAGCTAGATGGAGAGCTGGGAGAACTTTCTCAGCGGTTCTACCAGGCTGCAGTGCAGTTGGTGGGAATGCTGGACATGTCAGTGCCTGTAGTAGCGAAGCTGAGGCGGCTGCTCGACAGTCTGCCCAGAGAAACCCTGCCTGACGTGCTTGCCTCCATGATCCGCACCTCCAACACAGAGAAGCTCCAGGTGCTGAATGCAGTAGACTTGGAAGAGCGATTTAAGAAGACTCTTCCTATGCTCACTAGACAGATTGAGGGCCTTAAACTGCTGCAGAAGACTCGTAAACCCAAACCTGATGATGAAAAGAGGGTGTTGGTTATCCGTAAAGGCGGTGTGCTCCCCGGCCGTCAGTTCTCTCTTGATGAGGAaggtgaggatgaggatggtGATGACATGACTGTGCTGGAGAGGAAGGTGAATGAAGCAGCAATGCCTGAGTCTGCTCTACGTGTATGCCTAAAAGAACTCAAGCGTCTGAAGAAGATGCCCCAGTCCATGCCAGAGTATGCTCTCACCCGCAACTACCTGGAGCTCATGGTGGAGCTGCCTTGGAGCAAGAGCACCAAGGACTGCCTGGACATTCGGGCTGCACGGGTGCTTCTGGACAACGATCACTACGCCCTTGAGAAGCTGAAGAGGCGGGTGCTGGAGTACCTGGCAGTGCGGCAGCTCAAGAGCTCCCTTAAAGGTCCTATTCTGTGCTTCGTGGGGCCTCCAGGTGTGGGAAAAACCAGCGTGGGCCGCTCCATCGCTCGCACCCTGGGCAGGGAGTTCCACCGTATCGCCCTGGGAGGAGTGTGTGACCAGTCAGACATCCGTGGCCACAGGCGAACCTACGTGGGGAGCATGCCTGGCCGCATCATCAATGGTCTGAAGACTGTAGGCGTCAACAATCCTGTATTTTTATTGGACGAGGTGGACAAATTGGGCAAGAGCCTGCAGGGAGACCCCGCTGCTGCCCTGCTGGAGGTTCTGGACCCAGAGCAAAACCACAGTTTTACTGACCACTACCTCAATGTGGCCTTTGACCTCTCACAAGTCCTCTTCATCGCCACGGCAAACACCACAGCAACCATCCCCCCTGCTCTGTTGGACAGAATGGAGGTGCTGCATGTGCCAGGATACACACAGGAGGAGAAAGTGGAAATCGCTCATCGGCACCTGATCCCCCATCAGCTTGAGCAGCATGGCCTCACTCCTCAGCAGCTCCAGATCCCTCAAGACACCACACAGGAGATCATCAGCAAGTACACGCGGGAAGCAGGTGTGCGCTCTTTGGAGAGGAAGATTGGAGCCATCTGTCGGGCGGTGGCTGTGAAAGTAGCAGAAGGTCATAAGATGTCAAGATCGGAGTCGTCCAGTGAATCCGGAGCAGGTCAGGATCGAGCAGGTACAGGACAGGATTCTGACATGGCAGCTCCTCCCGAGATGCCCATTGTCATTGATCACGTTGCCCTCAAAGACATTTTGGGGCCACAGCTCTTTGAGATGGAGGTATCAGAGCGTCTGACTCTGCCCGGTGTGGCTATAGGCCTGGCCTGGACTCCGCTTGGTGGAGAGATCATGTTTGTGGAAGCCAGTCGTATGGAGGGTGAAGGTCAGCTCACGCTAACCGGCCAGCTGGGTGATGTCATGAAGGAGTCAGCACATCTGGCCATCAGCTGGCTCCGCAGCAATGCCAAGATCTACCAGTTAACaaacagtgtaggctgtgCTGACCCTCTTGAAGGCACTGACATCCACTTGCACTTCCCAGCGGGTGCAGTCACTAAAGACGGCCCCTCTGCTGGAGTTACTATCGTAACATGTCTAGCCTCTCTGTTCAGCGGGCGGCTGGTGCGCTCTGATGTGGCCATGACAGGAGAGATCACTCTGAGAGGCCTGGTGCTGCCGGTGGGTGGCATTAAGGATAAAGTCCTGGCAGCTCACCGTGCTGGTCTCAAAAGAATCATTCTCCCCAAACGTAACGAAAAGGACCTAGAGGAGATTCCAGCCCACATCCGTGCTGAACTGGACTTCGTCCCAGCTAGTTCTTTAGACGAGGTTCTTAACGCTGCCTTTGACGGTGGATTCCCTACTGCCACCATAACACACCCACAGGTTAGCAGCAAGCTCTGAAACTGCAAATACTTTgtctctcattcacacatacacacacaagacaaCCTTTCATGGTTCTTTGAAACTGAAAGCACTAGGGTGAACGTAAGGTTCAGCTCATGGAGTTCTGAAAATGtacttatttctgtttaataagCCAGTGTGATAATCCTATAATAATTACATTCGAATagaaaaattaatgtttaacaATGCACCAATATTAGATTTGTTACAGTGAAGTATTTCATGCCATGAACATGGTTCCTGCATGTGAACACAGGACACAGAATGTCTTAGTTGTCTGTCATTTCTGATACTTTGGTAGCAGAAGCTTTCAGAGAGTCACTCTCTTACTGTACCAGCTGATACTCAGAGCTCTGATAACATTATTGTATCAAAAAATAAGATTGCTGCATCCacactaattttatttttattaatgatgttaaaATAAAGTACTTCTGTTACTAATAAGAGATCCTCTGCTACGTTTGAGGGAACAAGTCACTGAACTGGTTATAATTTCTGATCTAGAGAAATGTGATGTCCAGTAGCTTGCTATTATATCACTTAATGTTTGAAAGGTACTGTGGAGCAGTAGTAAAAACAGTGTATTACAATCAtttagaatattaaaaataataaagactaCTGTGAATACTA

Function

symbol description
lonp2 Predicted to enable ATP binding activity and peptidase activity. Predicted to be involved in protein processing and protein targeting to peroxisome. Predicted to act upstream of or within protein quality control for misfolded or incompletely synthesized proteins. Predicted to be located in peroxisome. Predicted to be active in peroxisomal matrix. Orthologous to human LONP2 (lon peptidase 2, peroxisomal).

NR:

description
lon protease homolog 2, peroxisomal isoform X2

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0016558 protein import into peroxisome matrix biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006515 protein quality control for misfolded or incompletely synthesized proteins biological_process
GO:0005782 peroxisomal matrix cellular_component
GO:0009295 nucleoid cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004176 ATP-dependent peptidase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01338 lon; ATP-dependent Lon protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305370.1 True 3571 mRNA 0.50 15 13374859 13395693

Neighbor

gene id symbol gene type direction distance location
znf423 znf423,si:ch211-216l23.1,LOC107738741,LOC107583782 coding downstream 237642 12988345 ~ 13137217 (-)
si:ch211-212o1.2 tmem189,si:ch211-212o1.2,LOC108264382,LOC107672277,LOC107738740,LOC107740306,LOC107583780,LOC103466733,LOC100695703 coding downstream 390214 12948587 ~ 12984645 (-)
psme3ip1 fam192a coding downstream 460613 12904033 ~ 12914246 (-)
bbs2 bbs2,LOC107686271 coding downstream 612220 12748014 ~ 12762639 (-)
b3gnt9 b3gnt9 coding downstream 629232 12742353 ~ 12745627 (-)
il34 NA coding upstream 2582 13398275 ~ 13404730 (-)
sf3b3 sf3b3 coding upstream 15667 13411360 ~ 13440802 (-)
LOC113534846 NA coding upstream 41208 13436901 ~ 13436975 (-)
aars1 aars,LOC107686288,LOC107738729 coding upstream 79838 13475531 ~ 13491284 (-)
tgm2l LOC108264831,LOC108423869 coding upstream 98910 13494603 ~ 13505452 (-)
LOC117597528 NA non-coding downstream 56851 13311395 ~ 13318008 (-)
G98790 NA non-coding downstream 192309 13182343 ~ 13182550 (-)
G98776 NA non-coding downstream 239686 13129200 ~ 13135173 (-)
G98767 NA non-coding downstream 346262 13027458 ~ 13028597 (-)
G98607 NA non-coding downstream 536317 12838220 ~ 12838542 (-)
G99118 LOC108280567 non-coding upstream 249882 13645575 ~ 13647786 (-)
G99134 NA non-coding upstream 337258 13732951 ~ 13768470 (-)
LOC113534845 NA non-coding upstream 369233 13764926 ~ 13765056 (-)
LOC113534347 NA non-coding upstream 387082 13782775 ~ 13784737 (-)
LOC113534852 NA non-coding upstream 387862 13783555 ~ 13783624 (-)
G98770 NA other downstream 322548 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 950881 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 969578 12396507 ~ 12405281 (-)
admb NA other downstream 1029407 12311822 ~ 12345452 (-)
sspn sspn other downstream 1496655 11870908 ~ 11878204 (-)
c6h15orf39 c4h15orf39 other upstream 154987 13550680 ~ 13562574 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other upstream 940243 14335936 ~ 14347008 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 1951473 15347166 ~ 15357563 (-)
G101178 NA other upstream 4791754 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 6584376 19980069 ~ 19980259 (-)

Expression


Co-expression Network