LOC113534621


Basic Information

Item Value
gene id LOC113534621
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16500760 ~ 16510979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305372.1
ATGACGACTGTTTTTGCCAAAGATGGACCCTTAGGAACTGCTAAAAGGAGAGCAGCCTATGTACGCAGAGAGTTTCCATTGGAATACAGATCATATGTAGATGGGCAGTACTTTAATGAGAACTCTCTTCTTAAAAGAGATGAATTCACAATTGCTCTGGGCCTTTACATCGATGACTTTGAAATTGCCAATCCTCTAGGAACATCAAagctaaaacacaaaatgtgtgctgtgttttgggtcattgcaAACATACCTGCAAAATATAGGTCAACCCTCAACTCAATCCAGCTTGCTTTACTATGCAATATATCAACAGTTAAAAAGTGTGGGTATGCAAAAGTTCTGCAACCTCTTTTCTATGACCTAAAGTTATTGGAGCAAAATGGTGTTTACCTGGAGAAACTTGGTAAAACTGTGAGAGGTACAGCATTATTTGTTGCAGCTGATAATCTAGGTGCCCACTCTCTTGCAGGATTCCTGGAGAGCTTCTCTGTTGAGAGGTTCTGCAGATTCTGTTTGACAAGCAGTAGTGATGCTCAGCAGCAAGAGaTGGCTGTCCAACAGAAATTAACCATGAGAGTTATTGTCTCTGAGGGAGATATAAGAAAAATGACTATGATGGAACGACCTGACAGACTTGAAGATTTGATTGGGTGGCTCAAAGCCACGTTCTGTGCATGATACTGCTCTACTTGCAAACACTTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305372.1 True 711 mRNA 0.41 4 16500760 16510979

Neighbor

gene id symbol gene type direction distance location
LOC113534692 NA coding upstream 240587 16259445 ~ 16260173 (+)
mctp2a LOC108264697 coding upstream 644648 15812514 ~ 15856112 (+)
mef2aa mef2a coding upstream 691644 15723423 ~ 15809116 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding upstream 828426 15660992 ~ 15672334 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding upstream 847473 15613280 ~ 15653287 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding downstream 253716 16764695 ~ 16816272 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding downstream 327896 16838875 ~ 16928642 (+)
ppp1r15b LOC108263894 coding downstream 467956 16978935 ~ 16983976 (+)
blm blm coding downstream 530378 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 852146 17363125 ~ 17378340 (+)
G100301 NA non-coding upstream 182037 16318273 ~ 16318723 (+)
G100296 NA non-coding upstream 292346 16208165 ~ 16208414 (+)
G100292 NA non-coding upstream 298690 16201861 ~ 16202070 (+)
G100285 NA non-coding upstream 302927 16197618 ~ 16197833 (+)
G100229 NA non-coding upstream 315441 16180040 ~ 16185319 (+)
G100340 NA non-coding downstream 72642 16583621 ~ 16583947 (+)
G100341 NA non-coding downstream 73365 16584344 ~ 16584820 (+)
G100355 NA non-coding downstream 158408 16669387 ~ 16670025 (+)
LOC117597522 NA non-coding downstream 240028 16751007 ~ 16755979 (+)
G100360 NA non-coding downstream 247160 16758139 ~ 16758343 (+)
G100306 NA other upstream 150973 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1154614 15300482 ~ 15346146 (+)
G99341 synm other upstream 1976280 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 2458308 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 2544409 13932539 ~ 13956351 (+)
G100345 NA other downstream 89278 16600257 ~ 16601067 (+)
rgma NA other downstream 146622 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 889447 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 978567 17489546 ~ 17493092 (+)
G101403 NA other downstream 2040467 18551446 ~ 18551724 (+)

Expression


Co-expression Network