ddb1 (ddb1)


Basic Information

Item Value
gene id ddb1
gene name ddb1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30106693 ~ 30126222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305375.1
AGGTGGCGCTGTGACGCTTCGTGTTTTCCCAGTGGCTTCTTCTGTGTCTTCATGGTCGTACACAGAAGCAGAAACTAAACCCTAAAAAAAGGCGAATTTTCAGGTGTTCGTATCTTGAATTTGAACGCCATGTCCTACAACTACGTGGTAACGGCGCAGAAACCCACCGCGGTGAACGCCTGCATCACTGGACACTTCACCTCAGCGGAGGATCTTAACCTTCTCATAGCGAAGAACACACGTCTGGAGATCTATGTGGTCACGGCGGAGGGATTACGGCCGGTCAAAGAGATCGGCATGTACGGCAAGATCGCCGTCATGGAGCTCTTCAGACCCAAAGGTGAAAGTAAagaccttctgtttattttgacGGCGAAATACAACGCCTGCATCTTGGAGTACAAGCAGAACGGAGACAGTATTGATATCATCACTCGTGCTCATGGAAACGTACAGgatCGGATCGGGCGTCCGTCAGAGACCGGGATCATCGGTATCGTGGATCCGGAGTGTCGTATGATTGGTCTGCGGCTCTACGACGGTCTTTTTAAAGTCATCCCGTTGGATCGGGACAACCGCGAGCTCAAAGCCTTTAACATTCGCCTGGAGGAGCTGCAGGTCATAGACGTGCACTTCCTGTACGGATGCCAGGCGCCTACCGTCTGTTTTATATATCAGGACCCTCAGGGACGACACGTGAAGACGTACGAGGTTTCTCTGAAGGAGAAAGAGTTCAGTAAGGGTCCTTGGAAACAGGAGAACGTCGAAGCCGAGGCCTCGATGGTTATTCCCGTTCCTGAGCCGTTCGGTGGCGCTATAATCATCGGCCAGGAGTCCATCACGTATCACAACGGAGATAAATACCTGGCCATCGCACCTCCGACAATCAAGCAAAGCACGATCGTGTGTCATAACCGCGTGGACCCGAACGGCTCTCGCTATCTCCTGGGAGATATGGATGGAAGGCTGTTCATGCTCCTGCTGGAGAAAGAGGAACTGATCGATGGATCCATGGTGCTCAAAGATCTACGGGTGGAACTGCTGGGAGAGACATCCATCGCTGAGTGTCTGACCTACCTGGATAACGGCGTGGTGTTTGTTGGGTCCAGGCTTGGAGATTCTCAGCTGGTTAAActgAATGTGGACAGTAACGATCAGGGCTCGTACGTGGCGGTTATGGAAACATTCACTAACCTGGGACCGATAGTGGACATGtgtgtggtggatctggagcggCAGGGACAGGGGCAGCTGGTGACTTGTTCCGGTGCGTTTAAGGAAGGTTCTCTAAGGATCATTCGGAATGGTATAGGAATCCACGAGCACGCCAGTATCGACCTGCCGGGTATCAAAGGATTATGGCCTCTTCGCTCGGAGGCGGGCAGAGAGACCGATGACATGCTGGTGCTTTCTTTCGTTGGCCAAACCAGAGTGCTGATGCTGAGcggagaggaggtggaggagacCGAGCTTCCAGGGTTTGTCGATAACCAGCAGACGTTCTTTTGCGGAAACGTGGCTCATCAGCAGCTCATTCAGATTACTTCCGGTTCAGTGCGACTGGTCACGCAGGACAGCAAGGCTTTGATTAGCGAATGGAAGGAACCTCAGGGAAGAAACATCAGCGTGGCTGCTTGCAACTCCACCCAGGTGGTGCTAGCGGTGGGACGAGTGCTCTACTACCTGCAGATCCTCAGTGGAGAGCTAAAGCAGATTAGCTCCACAGAGATGGAGCATGAGGTGGCGTGTTTGGACATCACTCCTCTCGGCGAGAGCGGCGGAGAGTCCAGCCTGTGTGCCGTGGGTCTGTGGACGGACATCTCGGCCCGAGTCCTCCGCCTGCCCTGCTTCAGCCCTCTGCATAAAGAGATGCTGGGTGGAGAGATCATTCCACGTTCGATCCTGATGACCACGTTTGAGGGCAGCCATTACTTGCTGTGTGCTCTGGGAGACGGCGCTCTCTTCTACTTCGGCCTGGACTTGGATACaggcactCTGACCGAGAGGAAGAAGGTGACTCTGGGGACGCAGCCCACGGTGCTCCGGACCTTTCGCTCTCTTTCCACCTCCAACGTGTTTGCGTGCTCGGACAGACCCACCGTCATCTACTCCAGCAACCACAAGCTCGTCTTCTCCAACGTCAACCTCAAAGAGGTCAACTACATGTGCCCCCTCAACTCCGAGGGCTACCccgacagCTTGGCTCTGGCCAATAACAGCACTCTGACCATCGGCACCATCGACGAAATCCAGAAGCTCCACATTCGCACTGTTCCTCTGTACGAGTCGCCCAAgaggaTCTGTTATCAGGAGGTGTCCCAGTGTTTCGGCGTGCTCTCCAGTCGAGTGGAGATGCAGGATGTTAACGGAACCACGGCTCCCGTACGCCCCAGCGCCAGCACTCAGGCTCTGTCCAGCAGCGTGAGCTCCAGTAAGCTCTTCCCCAGCAGCACCTCCCCTCATGAGACCTCCTTCGGCGAGGAGGTGGAGGTGCACAGCCTGCTCGTGGTGGATCAGCACACTTTTGAAGTGCTTCATGCCCACCAGTTTCTGCCCAGTGAGTACGCGCTGAGCCTCGTGTCCTGTAAACTGGGCAAAGATCCTGCCGTCTACTTCATCGTCGGCACCGCCATGGTCTATCCTGAGGAGGCGGAGCCTAAGCAGGGACGCATCATCGTCTTCCACTACACAGATGGTAAACTGCAGACCGTAGCGGAGAAGGAGGTGAAAGGCGCCGTGTACTCGATCGTGGAATTCAACGGCAAATTGTTGGCCAGcatcaacagcactgtgcgcCTGTATGAGTGGACGGCGGAGAAAGAGCTGAGGACTGAGTGTAATCACTACAACAACATCATGGCTCTGTATCTGAAGACCAAAGGAGACTTCATCCTGGTGGGGGATCTGATGAGGTCGGTGCTGCTGCTGGCGTACAAACCCATGGAGGGAAACTTCGAGGAGATTGCTCGAGACTTCAACCCGAACTGGATGAGTGCTGTGGAGATTTTGGATGATGATAATTTCCTCGGTGCAGAGAACGCGTTTAACCTTTTCGTGTGCCAGAAAGACAGtgctgcCACCACTGATGAGGAGCGTCAGCATTTACAGGAAGTGGGTGTGTTCCACCTGGGTGAATTTGTGAACGTGTTCTGTCACGGTTCCCTCGTGCTGCAGAACCTCGGCGAGAGCTCCACTCCTACTCAGGGTTCTGTGCTGTTTGGAACCGTTAACGGAATGAtcgggctGGTGACGTCACTGTCGGAGGGATGGTACAGTCTACTGATGGATTTACAGAATCGACTCAACAAGGTCATTAAGAGCGTGGGAAAGATCGAGCACAGCTTTTGGAGGTCGTTCAATACGGAGAGAAAGACGGAGCAGGCCACGGGTTTCATCGACGGAGATCTGATCGAAAGCTTCTTAGACCTGGGACGGGCCAAAATGCAGGAAGTGGTCAGCACGCTACAGattgaTGACGGCAGCGGGATGAAGCGAGAGGCCACGGTGGATGAAGTGATTAAGATAGTGGAGGAACTCACCAGGATCCACTAACCCTACTGTGCTACATAACGCTTTGTacatagatataaataaatcagaaaggtgtgtgtgtgtgtgtgtgtgtgtgcaaaatagGTGCGtgctggagagaaagagagagggatgggtgtgtgtgtgtgtgagtgttggtgtttcACTCCTCGAGGTTCGGCTCGTCCTTCTTTTCAGAGCATCTTGTCCTGAAATAACGTAAATAAAACGCACACGTTTGTAGAACTGATCATTATGATgattttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcggtAAGCGCTCCTTTATCATCACGTTGCTTTATCAGAGCGGCGTGATTACGATGTTCTGACGGCACTGAGCGAGAGACACGGAAGGACGCTGATCACATGACTTTTATTCGTGATGTTTTTGTCGATGTGCTCTTCACCCAGTCTTTACTTTTAATAAAGCTTGCTCCAGTAAAA

Function

symbol description
ddb1 Predicted to enable DNA binding activity. Acts upstream of or within negative regulation of apoptotic process and regulation of cell cycle process. Predicted to be active in nucleus and site of double-strand break. Is expressed in blastomere; endoderm; nervous system; pharyngeal arch; and somite. Orthologous to human DDB1 (damage specific DNA binding protein 1).

NR:

description
PREDICTED: DNA damage-binding protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10610 DDB1; DNA damage-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305375.1 True 4018 mRNA 0.53 27 30106693 30126222

Neighbor

gene id symbol gene type direction distance location
iqcg NA coding upstream 382626 29716593 ~ 29724067 (+)
LOC117597519 NA coding upstream 556397 29520447 ~ 29550296 (+)
si:ch73-103b9.2 c4h16orf46 coding upstream 1328676 28774321 ~ 28778017 (+)
cibar2 fam92b,LOC108442585 coding upstream 1355952 28742035 ~ 28750741 (+)
gins2 gins2,psf2 coding upstream 1638943 28461829 ~ 28467750 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding downstream 131846 30258068 ~ 30265561 (+)
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding downstream 146322 30272544 ~ 30285534 (+)
LOC117597588 NA coding downstream 178410 30304632 ~ 30305794 (+)
b4galnt3b NA coding downstream 185011 30311233 ~ 30353488 (+)
c2cd5 c2cd5,LOC107686569 coding downstream 239397 30365619 ~ 30408560 (+)
G107223 NA non-coding upstream 42255 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 135600 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 183621 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 416877 29685374 ~ 29689816 (+)
G107075 NA non-coding upstream 624229 29482234 ~ 29482464 (+)
G107381 NA non-coding downstream 138742 30264964 ~ 30356549 (+)
G107387 NA non-coding downstream 235368 30361590 ~ 30429223 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 326634 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 431401 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 602612 30728834 ~ 30729657 (+)
cmc2 cmc2,LOC107711752 other upstream 1302621 28799464 ~ 28804072 (+)
def8 def8 other upstream 1944824 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2036008 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2140385 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2561167 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 268038 30394260 ~ 30498315 (+)

Expression


Co-expression Network