LOC117597582


Basic Information

Item Value
gene id LOC117597582
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17720545 ~ 17725320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305437.1
GTAACAGTCAACGTGCAGCATCGGCTTCAGTTCAGCACGCAAACAGTCTTTGCCTTGGAGAAGGATATGCCTCACGTGCTCATTGCATTGCACtttaacagaaacagaaacaacaaagcGCAAATTCACATCGTAAAGACTGTTATCTTTTATCAGATTAAAGAAGAGTCGAACCGTCAGCTGATGTCCGTCTGTTTATTataccaaaaaagaaaaacacacaacgcAGACAACAGCAGTTACACGTGGTGCCGTGACCATTCCGGATCATCAGATCAGCGCTTCGCAGATCGCCGTGGTTGCGTGACGGCTCGCCTGCTTCGCCGGTCTTCTCTCCCGGGTTTTCTTCATCGCCATCGCTCGCAGAGGCCCTGTGCTCGCGCAGAAGGAGGGCGCGTGTGTGGGATGAACAGCGTGTGACATCGCGGAACAAACTGTTGCATGTTAAAGGACCGGTAAAGAGTTTCATTGACTTCCTGATCGAcgacttttttttctctcttctccgAAGAACTTTCATTCATCGTTGATGCGTATTAATAGAGAGAGACTTTGTGATAAGGACCGCGGGACGCTTCAGTGACCTTCGAGCATCGTATCCTTTATCTGAACAGTATATTATGATTGTTAAAATGACTGTTGATgcgttttaaaaaaagaaacggTGATTGACTTTGAgtgagaaatattttattttattttcgtCGAAAAGAGACAAGAAACTTTTCTCATTGAACTGTGTTCATCCTAATATTTAACTGAGTTGGTTTGATTTCAAATTTCCCAGGATCTTATATGAACTATATATGAACATTTGTGAATTGTTTAAGGTTTTGCTGGTTGAGGCATATTAATTTGTGggaatttttcatattttttgtgCTTTCACTTTACAGTTGAAACATGTTTGAGGATACTAGCCAAGACAATTTCAGCCCTGTGAAACAATCTAATGTCACTTTTCCAATGGGCCTGAAATTTATCACAATGAGGGTGTCTGAAATTACATCTCAATGTTATGGGAGAGGTAGAGCTAATGTGGGTCTTGACCATATGCACACAGTCGATTCAGCGATCGGTGCTTCTGTAGGCCCAACAGCTAGCTCCACCACAATCACACGCCCAGATACTGAACGTGTCATTTCTCCTGAGGCATTAGGGAGCATAATTTCAGATTTGGCTCAGAAAATAGGGGAGAGTATTTCAGCCAGCCTTAACCTTGCGCACCAGCCCAGCCTAGTACAGCCTAATCCTCATTGCCAGTCTCAACACTCCAGTGTGTATTGATACATCTAGTCTGAAGGTGATAGTTCAGCAAGATTAAGCACCTCCGCCATTCTTCAGGGGCGATAAGAGTGATTCATGTACTGTCCATGAATGGGAGGATATGATGTGCAGTTATTTAGACAGAATGAAATGCAAAACACAAACTGATGTTTCTGATCTTATCATGAGCAGACTGGCTGGAAAAGCGAGAGATGTTGTTAAGGTGTCCCTGCGAAGCCGCCCTGAACTGAGTGCCAGTGAGCTTCCAAGTGCTGTGTTTGACATACTGAAACGCAACTTCATTGAGTTGGCTTACTCAAATATGCCTATGGCTGACTTCTATAATACTGTCCCAAGAGCAGATAAAAGTCCCATGGTTTACTGGATTCGACTTAACAAGGCCATAGATGTTGCTGTTGAGTGCTTGCACAGACATAATAAGAGCGTCGAGGATCCCGCTGCTGAAGCTGTCATGATGTTTGTTTCACATTGTCCAGACCCAAGTCTTGCTATGTCTTTTCAGTTTAAACCAGCTGAGAAGTGGAGCACCGCTGAGGTCCAGGAGCGGTTGGATAGTCATCAGAGGGATCTAAAGAGAGTCTCTTTGAGGACACAGCACACAACGTCTTTGCCAGCTTGCAACGAGTGCACCGTTACGGCATGCCCCAATTCTGTGTCCAGTTCTCCTCAGCAGCCTGCTCCCGTGCCAGCCCAGTCACTGACTCCTGTAAATCATCTTAATCCTAATGCTGTTCCATTCTCTCCAGACACCAGTCTTCGACACATAGTTGGCATGATGGATCGAGTCCTGTCATTGTGCACTGCCTCTGTCACTTCATCCAATCAGTTTCATGCAGGCAAAACTTCAGACTTCAAAACCAACTTAGGCTCTGtatgtagggtctgtagatccAAGGAACACACTACGTACTCACATTGTAGACGTCCGAGGCTATGTCGTCACTGTCTCAGTTCTGGCCACTCTAAGTGTGACTGTCCTAAAGCAGCATGCCCTGCCTTGGATACTGCTCAGTTAAACTGAATAGCCCATGTGATGAGAGGGGTAACATGGGCAATTTTGATAAAACCTCCCTCACAGGTTGAAAATAGGCAGACACAGGATAATGTGAGgcgtgcattatttttgttcgAGAGCATGAGCAAAAAGAATTTCAAATCCCTGGCAATTAGCCTTGATGTGGAAAAAGCGTTCGATTCAGTGTGATGGGAGTATTTGTATTTGGTATTGCAATGCTTTGGCTTTAATGAAGAGGTTATAAGAAGTCTTAAACTGCTATATCATTTACCAACAGccatgattaaaataaatggcAATGTCTCTAACTCAATTACACTGGAGCGAGGATGTTGTCAGGGATGCCCCCTGAGTCCCACGCTTTTTGCACTATTCATAAAGCCATTAGCTCAAGCAATTAGAGAAGATACAGAAATTCTAGGAATTCCAATAAAAGAAATTGAATACAAAATATGCCTGTATGCAGACAACATTCTTATGACTATTTCTTAGCCAGACTCCTGTTTACCTAAACTCATGTCTTGTCTTGAGCAGTTTGGTTGGTATTCAGGATATAAactaaatttacacaaaaccCAAACCCTCTCTTTTAATTATTCACCACAGGAAAATATacgtaataaatataattttaaatggaaaacaaataatattaaatatctgGGGGTTATTATACCAAAGAATCTGGCTAAAATTTATACTACTAATTATGCTTCTATTACGAAGGAACTGAAAGCAGACTAGGACAGTTGGATACCCATAACCTTTAGTTTGTATGATCAAATAGAAATTATAAGGATGAATGTTTTACTGcgattattgtttttctttcaattacTACCTTTAGGGATaccaaaaaaacaatttaatgacTGGAACCGAATGATCTCAAGATTTATATGGAAAAATCAGAAACCCAGGGTCAGACTTAAAACACTACAATTACCAAAGAAAAAGGGAGGATTGTCTCTTCCCTGTTTGGAGGACTATTATACAGCAGCACAATTAAAATATCTAGTCTGCTGGTGCATTAACGATTATGAGGCAAAATGGAAAGAATTAGAATTTAACCAACTAGACTTTCCTCTCCCTTCCTTATTAGGGGATAAAACTGCTAagattatgtatatattatattatattaagcAATTGGACATTGGTCCCTCTTAATATTTGGTTCAAAGAATGCAAAATTTTGAAGCTGGAGAGACAAGCACGGCTGTTAAGATGGGTGGCAtatgatagagacttcaaaacTGCACAGATCGATGTGCGGTTTAAACAATGGATATGGAACGACATTACATCATATTGTACAGTTTCATCCAAGATCAACATTTTTGCTGAAGCATATAAACGTGCCTCTGTATGCATACAGTCCTCCAAGTCTCACTCTACCttatatattaaagaaaaatgggaGAAGGAGGCCAATATAATTTTAACAGAAGAAGATTGGTTAAACATATGTAAATCACAGCATGCTACCTCCAGTTCTGGTCAGTGGAGAGAATTCTCATGGAAAAATATCATTAGATTTTTTATTACtccaaaaagaaaatatttacagaatgGTAATCCAGAATCTGCACTTTGCTGGAGACGTAACAACTCgatggttgattattttcatatattctGGAACTGTCCAGCAATCCAGTCTTACTGGTTATTGGTAGTCACGGAAATAGAATTAATACTGGGTTTTGAGATTGATTATAGCTTTGGTACTATATATTTAGGAAACATACCAACTGATTTTAATGCTCAAGACAAGTATCTTCTCAGATTGCTGCTGGTTGCTAGTAAAAAAGCAATAACCAAGAAATGGCTGGATGAGAATCCACCAACAAAAGAAGAGTGAATAGCAATTGTAAAGGATACATTTGATATGAAGAAAATGACCTTCTCTTTAAGTGTAATACATAGGA
>XM_034305438.1
AGTCAACGTGCAGCATCGGCTTCAGTTCAGCACGCAAACAGTCTTTGCCTTGGAGAAGGATATGCCTATTAAAGAAGAGTCGAACCGTCAGCTGATGTCCGTCTGTTTATTataccaaaaaagaaaaacacacaacgcAGACAACAGCAGTTACACGTGGTGCCGTGACCATTCCGGATCATCAGATCAGCGCTTCGCAGATCGCCGTGGTTGCGTGACGGCTCGCCTGCTTCGCCGGTCTTCTCTCCCGGGTTTTCTTCATCGCCATCGCTCGCAGAGGCCCTGTGCTCGCGCAGAAGGAGGGCGCGTGTGTGGGATGAACAGCGTGTGACATCGCGGAACAAACTGTTGCATGTTAAAGGACCGGTAAAGAGTTTCATTGACTTCCTGATCGAcgacttttttttctctcttctccgAAGAACTTTCATTCATCGTTGATGCGTATTAATAGAGAGAGACTTTGTGATAAGGACCGCGGGACGCTTCAGTGACCTTCGAGCATCGTATCCTTTATCTGAACAGTATATTATGATTGTTAAAATGACTGTTGATgcgttttaaaaaaagaaacggTGATTGACTTTGAgtgagaaatattttattttattttcgtCGAAAAGAGACAAGAAACTTTTCTCATTGAACTGTGTTCATCCTAATATTTAACTGAGTTGGTTTGATTTCAAATTTCCCAGGATCTTATATGAACTATATATGAACATTTGTGAATTGTTTAAGGTTTTGCTGGTTGAGGCATATTAATTTGTGggaatttttcatattttttgtgCTTTCACTTTACAGTTGAAACATGTTTGAGGATACTAGCCAAGACAATTTCAGCCCTGTGAAACAATCTAATGTCACTTTTCCAATGGGCCTGAAATTTATCACAATGAGGGTGTCTGAAATTACATCTCAATGTTATGGGAGAGGTAGAGCTAATGTGGGTCTTGACCATATGCACACAGTCGATTCAGCGATCGGTGCTTCTGTAGGCCCAACAGCTAGCTCCACCACAATCACACGCCCAGATACTGAACGTGTCATTTCTCCTGAGGCATTAGGGAGCATAATTTCAGATTTGGCTCAGAAAATAGGGGAGAGTATTTCAGCCAGCCTTAACCTTGCGCACCAGCCCAGCCTAGTACAGCCTAATCCTCATTGCCAGTCTCAACACTCCAGTGTGTATTGATACATCTAGTCTGAAGGTGATAGTTCAGCAAGATTAAGCACCTCCGCCATTCTTCAGGGGCGATAAGAGTGATTCATGTACTGTCCATGAATGGGAGGATATGATGTGCAGTTATTTAGACAGAATGAAATGCAAAACACAAACTGATGTTTCTGATCTTATCATGAGCAGACTGGCTGGAAAAGCGAGAGATGTTGTTAAGGTGTCCCTGCGAAGCCGCCCTGAACTGAGTGCCAGTGAGCTTCCAAGTGCTGTGTTTGACATACTGAAACGCAACTTCATTGAGTTGGCTTACTCAAATATGCCTATGGCTGACTTCTATAATACTGTCCCAAGAGCAGATAAAAGTCCCATGGTTTACTGGATTCGACTTAACAAGGCCATAGATGTTGCTGTTGAGTGCTTGCACAGACATAATAAGAGCGTCGAGGATCCCGCTGCTGAAGCTGTCATGATGTTTGTTTCACATTGTCCAGACCCAAGTCTTGCTATGTCTTTTCAGTTTAAACCAGCTGAGAAGTGGAGCACCGCTGAGGTCCAGGAGCGGTTGGATAGTCATCAGAGGGATCTAAAGAGAGTCTCTTTGAGGACACAGCACACAACGTCTTTGCCAGCTTGCAACGAGTGCACCGTTACGGCATGCCCCAATTCTGTGTCCAGTTCTCCTCAGCAGCCTGCTCCCGTGCCAGCCCAGTCACTGACTCCTGTAAATCATCTTAATCCTAATGCTGTTCCATTCTCTCCAGACACCAGTCTTCGACACATAGTTGGCATGATGGATCGAGTCCTGTCATTGTGCACTGCCTCTGTCACTTCATCCAATCAGTTTCATGCAGGCAAAACTTCAGACTTCAAAACCAACTTAGGCTCTGtatgtagggtctgtagatccAAGGAACACACTACGTACTCACATTGTAGACGTCCGAGGCTATGTCGTCACTGTCTCAGTTCTGGCCACTCTAAGTGTGACTGTCCTAAAGCAGCATGCCCTGCCTTGGATACTGCTCAGTTAAACTGAATAGCCCATGTGATGAGAGGGGTAACATGGGCAATTTTGATAAAACCTCCCTCACAGGTTGAAAATAGGCAGACACAGGATAATGTGAGgcgtgcattatttttgttcgAGAGCATGAGCAAAAAGAATTTCAAATCCCTGGCAATTAGCCTTGATGTGGAAAAAGCGTTCGATTCAGTGTGATGGGAGTATTTGTATTTGGTATTGCAATGCTTTGGCTTTAATGAAGAGGTTATAAGAAGTCTTAAACTGCTATATCATTTACCAACAGccatgattaaaataaatggcAATGTCTCTAACTCAATTACACTGGAGCGAGGATGTTGTCAGGGATGCCCCCTGAGTCCCACGCTTTTTGCACTATTCATAAAGCCATTAGCTCAAGCAATTAGAGAAGATACAGAAATTCTAGGAATTCCAATAAAAGAAATTGAATACAAAATATGCCTGTATGCAGACAACATTCTTATGACTATTTCTTAGCCAGACTCCTGTTTACCTAAACTCATGTCTTGTCTTGAGCAGTTTGGTTGGTATTCAGGATATAAactaaatttacacaaaaccCAAACCCTCTCTTTTAATTATTCACCACAGGAAAATATacgtaataaatataattttaaatggaaaacaaataatattaaatatctgGGGGTTATTATACCAAAGAATCTGGCTAAAATTTATACTACTAATTATGCTTCTATTACGAAGGAACTGAAAGCAGACTAGGACAGTTGGATACCCATAACCTTTAGTTTGTATGATCAAATAGAAATTATAAGGATGAATGTTTTACTGcgattattgtttttctttcaattacTACCTTTAGGGATaccaaaaaaacaatttaatgacTGGAACCGAATGATCTCAAGATTTATATGGAAAAATCAGAAACCCAGGGTCAGACTTAAAACACTACAATTACCAAAGAAAAAGGGAGGATTGTCTCTTCCCTGTTTGGAGGACTATTATACAGCAGCACAATTAAAATATCTAGTCTGCTGGTGCATTAACGATTATGAGGCAAAATGGAAAGAATTAGAATTTAACCAACTAGACTTTCCTCTCCCTTCCTTATTAGGGGATAAAACTGCTAagattatgtatatattatattatattaagcAATTGGACATTGGTCCCTCTTAATATTTGGTTCAAAGAATGCAAAATTTTGAAGCTGGAGAGACAAGCACGGCTGTTAAGATGGGTGGCAtatgatagagacttcaaaacTGCACAGATCGATGTGCGGTTTAAACAATGGATATGGAACGACATTACATCATATTGTACAGTTTCATCCAAGATCAACATTTTTGCTGAAGCATATAAACGTGCCTCTGTATGCATACAGTCCTCCAAGTCTCACTCTACCttatatattaaagaaaaatgggaGAAGGAGGCCAATATAATTTTAACAGAAGAAGATTGGTTAAACATATGTAAATCACAGCATGCTACCTCCAGTTCTGGTCAGTGGAGAGAATTCTCATGGAAAAATATCATTAGATTTTTTATTACtccaaaaagaaaatatttacagaatgGTAATCCAGAATCTGCACTTTGCTGGAGACGTAACAACTCgatggttgattattttcatatattctGGAACTGTCCAGCAATCCAGTCTTACTGGTTATTGGTAGTCACGGAAATAGAATTAATACTGGGTTTTGAGATTGATTATAGCTTTGGTACTATATATTTAGGAAACATACCAACTGATTTTAATGCTCAAGACAAGTATCTTCTCAGATTGCTGCTGGTTGCTAGTAAAAAAGCAATAACCAAGAAATGGCTGGATGAGAATCCACCAACAAAAGAAGAGTGAATAGCAATTGTAAAGGATACATTTGATATGAAGAAAATGACCTTCTCTTTAAGTGTAATACATAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305437.1 True 4233 mRNA 0.40 3 17720545 17725320
XM_034305438.1 False 4144 mRNA 0.40 2 17720545 17725315

Neighbor

gene id symbol gene type direction distance location
alpk3a LOC108264806,LOC104964022 coding downstream 242260 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 412643 17088641 ~ 17307902 (-)
LOC117597525 NA coding downstream 776115 16938891 ~ 16944430 (-)
chd2 chd2,LOC107690375,LOC107715217 coding downstream 979474 16680922 ~ 16741071 (-)
LOC113534689 NA coding downstream 1110235 16581362 ~ 16610310 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding upstream 557299 18282619 ~ 18524226 (-)
znf710a znf710 coding upstream 1009107 18734427 ~ 18741724 (-)
dhx34 dhx34 coding upstream 1584568 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 1681730 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 2326012 20051332 ~ 20054436 (-)
G100771 NA non-coding downstream 2517 17717351 ~ 17718028 (-)
G100765 NA non-coding downstream 116887 17603229 ~ 17603658 (-)
G100764 kti12,LOC107562123 non-coding downstream 117775 17598489 ~ 17602770 (-)
G100748 NA non-coding downstream 177192 17543141 ~ 17543353 (-)
G100739 NA non-coding downstream 226922 17493412 ~ 17493623 (-)
LOC113537962 NA non-coding upstream 121705 17847025 ~ 17852060 (-)
LOC117597604 NA non-coding upstream 361335 18086655 ~ 18086971 (-)
LOC117597605 NA non-coding upstream 438679 18163999 ~ 18167769 (-)
G101383 NA non-coding upstream 800165 18525485 ~ 18528714 (-)
G101405 NA non-coding upstream 826121 18551441 ~ 18551725 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 2362982 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 3373537 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 4157971 13550680 ~ 13562574 (-)
G98770 NA other downstream 4668234 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 5296567 12420437 ~ 12423978 (-)
G101178 NA other upstream 462127 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 2254749 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 2670546 20395866 ~ 20416574 (-)
G102566 NA other upstream 3228282 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 3270021 20995341 ~ 21013100 (-)

Expression


Co-expression Network