pskh1 (pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554)


Basic Information

Item Value
gene id pskh1
gene name pskh1,LOC107726478,LOC107672191,LOC107596998,LOC107733554
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15018958 ~ 15026868 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305455.1
AGGAAAGTTGGAGAAAAGCTGCGCTAATAAAATGGAGAGAACAGCTGAGAGTGGGCTGAGGAGGCTGGCGGCGCTGGAGACCTCTGCAATCCTGCCCTCTTACTCCCTGCGTCGAGTGCCACAAAAACAGCGAGAAGATTGATagactttacatttacatattaccCGAGGAGAAGATAGTTCTCTGGTAGAACTTGGTGACTGTCCTTGTCATCCTTGTTTATTGTGGCATTGAAAGCTTCTGTCTGTGCCTTTGGCTGGCACGGGTTATGAGGATGTGCTGCCCGCATTGGGTGCGAAGGATCCTGACGTGATGGGGTGCAGGACGAGCAAGGTCCTCCCAGAACCACCAGCAGACGTGCAGCTAGATCTTGTCAAGAAGGTTGAGCCTCAGCAAACTGATGTCTATAAGAACTTTATTCGTGTGGATGGCAGTGACAAGAAAACTGGCTCTCCTTCCCCTCAGGGTCAAAGCCAAGCTACAGGTGCTGCCACTAATTCCCCTACGGCAGGAAAAGGCCAGCTGGAGCCCTCTGAACCACGGCGAAACAAGGTGGCCAAATACCGGGCCAAGTTTGACCCTCGGGTGACGGCTAAGTATGAGATTAAGGCACTCATTGGTCGTGGCAGCTTCAGCCGGGTGGTGCGGGTTGAGCACAAGGGTACACGCCAGCCATATGCAATCAAAATGATCGAGACTCGATGGCGTGAGGGTCGCGAGGTGTGTGAGTCGGAGCTGCGAGTCCTGCGGCGTGTACGCCACACCAACATCATCCAGCTGATGGAGGTTTTTGAGACGGCTGAGCGTGTGTACATGGTGATGGAGCTGGCCACAGGAGGTGAGCTCTTTGACCGCATCATCGCACGCGGTTCCTTCACTGAGCGGGATGCCACACGTGTACTCCGCATGGTGCTGGACGGTGTGCGCTACCTGCACATGCTAGGCATCACCCACCGCGACCTCAAGCCTGAGAACCTGCTCTACTACCACCCTGGTGCTGACTCCAAGATCATGATCACCGACTTTGGTCTAGCGAGTACACGCAAAAAGGGTGACGAATGCCTTATGAAAACAACTTGTGGCACACCTGAATACATCGCACCTGAAATCCTAGTACGCAAGCCCTACACCAATGCTGTGGACATGTGGGCGCTGGGGGTTATCTCCTACATCCTGCTCAGTGGCACCATGCCCTTTGAGGACGACAACCGCATGCGCCTCTATCGGCAGATCCTGAAGGGGAAGTACAGCTTCTCTGGGGAGCCGTGGCCGAGTGTGTCCAACTTGGCAAAGGACTTCATTGACCGTGTGCTCACTGTGGACCCGAGCGAAAGGTTGACGGCTGGCCAGGCGCTCAAGCACCCCTGGATTGTTAGCATGGCTGCTTCGTCTTCCATGAAGAATCTACAGCGCTGCATCTCTCAGAACCTGCTCAAGAGGGCGTCGTCGCGCTGCCAAAGCACGAAGTCAGCACAGTCAACGCGCTCCAGCCGCTCGAGCAAGTCAGGCCGAGCACGGCGTGTCAGAGAGAAGGAGCTGAGGGAGCTCAACCGCCGCTACCAGCAACAGTACAACGGCTGAAGAAAGGAACCTGCAGTCACACTGCACATGCTGGCATCGACACTCCGGGACCCACTAGACATGTGCCGATAATCTTTTATACGATATTTTACAAACATATTTCAGAGTTTTGTCACTGTCCCTGAATCCTATTCAGAAGGCAGCCTAAGGTCTTTTCACGTGGATCCTTCATTGTGAAGCCAGGCTCATAATCCGGTTAACTAAATGAGAAATCAATAcaagttggggaaaaaaagatggcAAACAGAACTGTCACTTGGTCTTCTCTGGCTGAGtaataattttgtcatttttagaatATCCTTATACTTTGTGAGCTCTTAAACCATGAGGAAAGATTAAGCAATTATCctgataataaaatataatatcggcacatgcctaGGACCCACATGCTGTGAGCAGAGGAGGTAAAGTGGAACAGGAGTGGCGTGTACTTACGAGTCTGATGGAAGAACTCTGAGAGACGACACCCTCGTTGACCACAGAGCCAATtagcaaataaatatatttcactcaTTCTCCAGTCCATCTCTGTGCTggtgttttttcctttatgttcatgttatttgtgtgttttttcccttatttatttattgttaatgtttttttcattgttatatTGTCTCTGGAGTTACTGTCTGATTAAGCCTTTTACCTGATTGTATCTGTTGAACAGAATCCTACATTATGAAGTTGCTGGAAGGACTACTAAATCTGTGTTCGCTGTTTTTAGACCTTCCTGATTTTTgctgtgaagtatttttgttaaCCGTTCTAGTTAGTTGCTCTGTAGGGTGATTTTGATGCTGTTAATTGTTTCCCGTTTATCGCAGTTTATTTTGccaaaaatcatttaaaatatgaagGTGGAACTAtgccttttctttctaaagaaACCACTTGGGTGAAGTTATAACTTATGGGAGCTTGTTACAGTGAGATCTCTAACGGTACTGCTTCAAGTAATTCCTGTCACCGCTAAGCATTTTGATTGACAGATTGAGCTACAGTATGTAAGGCTgatttacagtatgtttttaatctttaaataaaatgaacaccCCAAGCATTTGAGCTAATATGCAGTACTTATGATTGTATAAGTTTCATTCAATCGTAGACATGTTTTATATGTGAACTTATTAATCAAATCAGTCAGCACATTAAACCATTTCACATATTTGGTActtaattttactttaattttttttttttttttttaaagaacattggGTACATTGGATTTATCATACAGTGAATGTGCGTATTTTGTTACGAGGATCAGCTTGGTATCTTGTCTTAATTTAGGAATTTTCCCACACTTGTGAAACTTCCCTATTGCGTTTATTAGTAAGCATTAACACTGTATTAGTTTGAAAAATGAATGCGGTATTTTTGGTTCTGCTTTTTCCCCACTAAAGTGGCCAAACTGATAAATTTGATGCAGTTATAACATATTAGTTATCAAGCTATTGAAAAATTACTTTcttagtaattaataattagtgtAATAGTCTGCTATACCTTAAAGTTCTTTATCACTATGAATCAACAcaataagtgatttttttctttaaaacagtaAATTCTACTTCTTTTGGGAAAACCACTGTTTTATAATTTTGCGTTTTTAACCGAACGACAAGGTTGTTTTTAAGGAAGGAAATTTAACAGTGTTATAGTTTGAATTTACATCTGatgcattaataaaatgaatccTTTGCCAAATTGTCAGTTAAGGAAATGTGCCGCAAAAAAGTATGAGGAGTAGCAAGTTCCTGAATTTCCCAAGACGTACAGCATATGGAGTTCAGTTGTTTGTGTAAACCTAGTTGGATAAATTTTCTGTTTGATGAAGCTGATCCAACACTGTCTCTTGAAGGaaaagtgtaaatatgtgttgtgtttgtgttgtttttgttttaatgaaggTTAATGTTGGATCatgttaaataacttttttccccagaataGTGAATTGGAAGTTTTTATCAAATGTCTCTATTAAAGAGTTTCATCTAAAAGGTTTTTA

Function

symbol description
pskh1 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PSKH1 (protein serine kinase H1).

NR:

description
serine/threonine-protein kinase H1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08808 PSKH; protein serine kinase H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305455.1 True 3617 mRNA 0.43 3 15018958 15026868

Neighbor

gene id symbol gene type direction distance location
mbtps1 mbtps1,LOC107672278,LOC107694940,LOC107596929 coding downstream 3821 14988788 ~ 15015137 (-)
slc38a8a slc38a8 coding downstream 40808 14969784 ~ 14978150 (-)
pnp6 LOC108264829,LOC108424368,LOC103033869 coding downstream 237405 14771280 ~ 14781553 (-)
calb2a calb2,calb2a,LOC108264862,LOC107672188 coding downstream 258464 14748622 ~ 14760494 (-)
got2a got2,LOC107694944,LOC107596935,LOC107738675,LOC107726360 coding downstream 276278 14735413 ~ 14742680 (-)
nrn1la nrn1l coding upstream 16430 15043298 ~ 15072495 (-)
edc4 edc4,LOC107733561,LOC107726309 coding upstream 49006 15075874 ~ 15105110 (-)
nutf2 nutf2 coding upstream 78447 15105315 ~ 15119718 (-)
tsnaxip1 tsnaxip1 coding upstream 94179 15121047 ~ 15132206 (-)
pard6a pard6a,LOC107692936 coding upstream 150343 15177211 ~ 15200248 (-)
G99493 NA non-coding downstream 369965 14648078 ~ 14648993 (-)
G99482 NA non-coding downstream 415486 14601223 ~ 14603472 (-)
G99453 NA non-coding downstream 482948 14533820 ~ 14536010 (-)
LOC113534271 NA non-coding downstream 499174 14510924 ~ 14519784 (-)
G99433 NA non-coding downstream 565851 14448856 ~ 14453107 (-)
G99780 NA non-coding upstream 122535 15149403 ~ 15150315 (-)
G99775 NA non-coding upstream 133335 15160203 ~ 15168426 (-)
G99784 NA non-coding upstream 144443 15171311 ~ 15173434 (-)
G99801 NA non-coding upstream 149307 15176175 ~ 15180912 (-)
G99915 ctcf non-coding upstream 270737 15297605 ~ 15299578 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 671950 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1456384 13550680 ~ 13562574 (-)
G98770 NA other downstream 1966647 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 2594980 12420437 ~ 12423978 (-)
znf143b znf143,znf143b,LOC107672322 other downstream 2613677 12396507 ~ 12405281 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other upstream 320298 15347166 ~ 15357563 (-)
G101178 NA other upstream 3160579 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4953201 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 5368998 20395866 ~ 20416574 (-)
G102566 NA other upstream 5926734 20953602 ~ 20966910 (-)

Expression


Co-expression Network