LOC117597588


Basic Information

Item Value
gene id LOC117597588
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30304632 ~ 30305794 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305470.1
GTTTTTATTCTCCTGCTGGTGGTGACTTGTGGTCTGGCTGAAGGTCTGCTAAGAGAATATATTTTCATTAGCGCTCCATTAGGGTGGCGTGAAGCTCAGTCATATTGCAGAAGATATTACAAAGATCTGGCCACCATCACCACTATGGAGGAAAACAAACGCCTCGTAGAATCTGGATCTGGTTCTTATGAAAATTGGATCGGGCTGCGCAGAACATCAGGCACCTGGACCTGGTCTGATGGAGAACCACTTTCTTTCCCAAACTGGTTTGGTGACATTAGTGTTTTTCCAATATATTGGGACAATTGTGCTGTCACATCTTATGATTACTCAGGATTCTTAGTGAACTATGACTGCAGAACTGGCAGGAAGTTCTACTGCTATCGGTTCCTGATCCTGGTGAAGGAGAACAAGACCTGGCAGGAGGCTCAGAAGTACTGCAGGACTCATTACACTGGTTTGGCCTCCGTGATCTCCGAGACGAGTCTGCGGCAGCTGAAGCTAGAGACGGTGCAGACgcagacagagagtgtgtggaCCGGCCTGCGCTTCGTGAACGGAATATGGTTCTGGGTGAGCGGGGAGCAGCTGGGGAGCCTGGTCTCAATGCCTTCATGTCCAGCTCTATCTTACCGCTGTGGAGCTCTCAACACCACGACCAACACCTTGAAGAACCGAAACTGCAATGACAGGCTGAACTTCATCTGCTACCGgaaGTGattttacacaaatacacaatcTCCTTCAGGAAGAATATACGCATCACACGatatcatcattcatcatttatatatagttttaggtttatttactaattttttAATTAGGTTTAAGGTTTAGATTCTGGTAGAGGAACTGCAGCTGAACACAAGAGGAGGTTATTTGTTGGTGAAAGGGTcagattttataataatgtagGAATTTACACACGTAATAAACTTTATTACACCACAGTGGCGTAGAATGTAGtgctggatt

Function

GO:

id name namespace
GO:0050953 sensory perception of light stimulus biological_process
GO:0007601 visual perception biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305470.1 True 978 mRNA 0.45 2 30304632 30305794

Neighbor

gene id symbol gene type direction distance location
cd151l LOC108264681,LOC108410653,LOC105891114,LOC106587086,LOC103368535,LOC106561929 coding upstream 19098 30272544 ~ 30285534 (+)
taldo1 taldo1,LOC107711369,LOC107599753 coding upstream 39071 30258068 ~ 30265561 (+)
ddb1 ddb1 coding upstream 178410 30106693 ~ 30126222 (+)
iqcg NA coding upstream 580565 29716593 ~ 29724067 (+)
LOC117597519 NA coding upstream 754336 29520447 ~ 29550296 (+)
b4galnt3b NA coding downstream 5439 30311233 ~ 30353488 (+)
c2cd5 c2cd5,LOC107686569 coding downstream 59825 30365619 ~ 30408560 (+)
LOC117597544 NA coding downstream 72909 30378703 ~ 30379745 (+)
lmf2a lmf2,LOC108437435 coding downstream 104872 30410666 ~ 30426455 (+)
si:dkey-88e18.2 NA coding downstream 279989 30585783 ~ 30592140 (+)
G107223 NA non-coding upstream 240194 29971482 ~ 30064438 (+)
G107222 NA non-coding upstream 333539 29970878 ~ 29971093 (+)
G107216 NA non-coding upstream 381560 29922752 ~ 29923072 (+)
G107140 NA non-coding upstream 614816 29685374 ~ 29689816 (+)
G107075 NA non-coding upstream 822168 29482234 ~ 29482464 (+)
G107387 NA non-coding downstream 55796 30361590 ~ 30429223 (+)
G107382 LOC108264175,LOC108437702 non-coding downstream 147062 30452856 ~ 30455383 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding downstream 251829 30557623 ~ 30562901 (+)
G107629 bbs10 non-coding downstream 423040 30728834 ~ 30729657 (+)
LOC113526871 NA non-coding downstream 522282 30828076 ~ 30829663 (+)
cmc2 cmc2,LOC107711752 other upstream 1500560 28799464 ~ 28804072 (+)
def8 def8 other upstream 2142763 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2233947 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2338324 27944790 ~ 27966308 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other upstream 2759106 27526123 ~ 27545526 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other downstream 88466 30394260 ~ 30498315 (+)

Expression


Co-expression Network