cdh13 (cdh13,LOC107684661,LOC107722459,LOC107738387)


Basic Information

Item Value
gene id cdh13
gene name cdh13,LOC107684661,LOC107722459,LOC107738387
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 10706871 ~ 11042272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305493.1
CGCGCGAGGCTGCACTTGTAGTGTGGAAGGAAGTTGGCTCGAGGCTTCGTGGCTTCACTCTTCGCAGCGCCACTTGCACTCCGGCATTATGAGCAGAGCTGGCCAGAGCTGCGCGCCTTTCTGAATTACGTGCTGAGTGATTAGAGATCATGGAGTTGGGAGCCCGCGTCCTCGTCGCCTTCCTCGCCTCCCAGattgTGTGCACTGCAGCTCAAGAGGAGGCGGAGGAGGCAGCATGCTCACCTGGCTTTCAGGTGAAGAAGTACCATGTGGAGTATGATGGAGGGTTCCTGAAAGATCAGCCTCTCCTGCAAGTGGTGTTTGATGACTGTGAGGGGAATAAGGATGTGGAGTTTGAAGTGTCTCACCCCGACTTCCTGATAGATGAGGACCTGAATCTGGTCCCAAGACGAGATGTAGCTGACAGTGGGACGGTCATATTCATTCACTGGCTCAGTGACCATGCTGATAACACAGCGCAGGTGGACATAATTGGAGCGCCATCCCAATCTACCCATACACTcaggGAGATTCTGGGTGTTGGAAAGATGACGCCATACAGGTCGAAGAGATCCCTGCTGGTGCCGCCCATGTTTGTGCCTGAGAACCAGCGTGCACCGTTTCCCAGGTCCATCGGAAAGTCACATGTGATCTCATCTGATATGAAAGAGGACCACATTTTTCGGCTGACGGGAAAAGGGGCAGATCAGGATCCGAAAGGTGTGTTCAGCATCAACAAACTGACAGGAGAGGTTGCAGTGAGCCGCGCCCTGGACCGAGAGGCCATAGCTTTTTACCACctCCAAGTGTCAACCACAGACATGACTGGCAGGCTTGTGGAGGGACCTGTGGATCTGGACGTGTTTGTAATTGACCAGAATGACAACAGACCCATTTTCAGGGAGACTCGCTATTCTGGAGAGGTTCTGGAGGGCTCCCCTACAGgcaCCACGGTGATGACGATGACTGCTTTTGATGCTGATGATCCCAACACGGACAATGCCGTCCTGCGCTACATAATTGTGAGACAGTCTCCTGAGAAGCCCTCACCAAACATGTTCTATATTGACCCAGAGAGAGGTGACATTGTCACTGTCATCTCACCATCCCTACTCGACAGAGAGACGCTGCCCACCACACAGTACGAGCTGGAGATTGTGGCTAAAGACATGGCAGGAAGTGAGGTTGGATTGACAGGAACTGCCACtgccaccatcaccatcacagaCAGAAACGATCATGCACCTGAGTTCACCCACTCACTGtTCCAGGCATCAGTGGATGAAGGCTCTAAAGGCATTGTGGTGAACCTGACAGTGGATGATCGAGATGACCCCGCCACAGGAGCTTGGAGAGCCATCTACTCCATCATTAACGGAGATCCCAACCACAACTTTGCGATCCACACCAACCCAGACAATAACGAGGGCATGCTGTCTGTGGTTAAGCCTCTAGACTATGAAAGCAACGTGTTTCACACTCTGCTGATAAAGGTGGAGAATGAGGACCCTCTGGTTCCTGATGTCATATACGGCCCAAGTTCCACAGCCACTGTGTATATCACAGTTGAGGACGTGAACGAGGGACCGGTCTTTTTCCCTGATCCTCTGGTGGTCACCAAGTGGGAGAATATTCCTGTAGGCAGCTTTGTGGCTATGCTCAATGCCACTGACCCAGACTACCCTCAGGTCCAGAGCATAAGGTTTGCAGTGCTGAGAGACCCAGCAGGTTGGCTCAGTGTAAACCCAGTGAAAGGCACAGTAAACACTACAGGCACGCTGGACCGTGAGTCTCCCCATGTCCACAACAACCGGTACAGTGCTGTCTTCATGGCCACAGACAATGGTAACCCTCCTGCTACAGGCACCGGTACTCTGATCATCACTCTGGAGGACGAAAACGACAACGCACCCTATGTGGTGCCCTCAGTAGTACGGGTATGTGAAGATGCCAAGGAGGTGAATGTGGCAGTGATCGGAGCACGGGACAAAGATATCCACCCCAACACAGACCCTTTCAAGATAGAACTTGGGAAACAGCTGGGTCTGGAGAAGACATGGAGGATGTCCAAGATTAACAacacacattcacagatcaTGCTGCTGCACAGTCTGAAGCGAGCCAACTACAACCTGCCCCTGGTCCTGACTGACTCCGGCTTCCCACCACTCACAAACAACACAGAGCTCAAAGTGCAGGTGTGCACCTGTAAGAAGAACAGAATGGACTGCAATGGAGTCGGCTCTCTTCGAACaaatctgctgctgctgcttggcCTGCTCCTGTTCTCCATGCTCTgctTGTAAAGCTCAATCTGTCTGTTGCCCCCTTACAACACTGACGAGCATCTCCCAGTCTGTGCCCCCATCAAACCAAGACTGAGGCAACTGACAAGGACCTTTCACCACATTTCAGAAGACACCTTTAACTCCAGGCCCCCAGTTTATTTTGTCCAGCACCATCATAATTTACCCATCTCTGccccctctctcgctctctctctctctctttcccttatTCCTTCCCTGcaccatctttctctctcatacCACTGGACACTGTCATGGATGCTACTGCCTGAATGAACTCTCACTGGATAAGGATGTACCGGATGGGGGAAAAGCAATTAGACtttctgatgtattttatttgtctctGGTAAAAGAGTACTGTACGAATTTGTTTACTAATGTAAGGCGAGGACGTAAGGCGTGTTTAGTCTGCCGTGACTGTGGTTTCTTAGGGCAAGGTGGTAGCCAAAAGCCTTCAAAGTTTAAAGTCAAATCTCTGGagtctttattttttgttttggtttttattgCATTAGTTGTTATGGAGTGGAAAATATCTTTATAGTAACGGTGTGAAAtggtggtgggggtggggttacaatatatatatatattttattttttaccattGTACAAATTTATTGATTAACTTATGTAATTTGACTGCAGTCAATTACCCCTCccaaataaaagacaaaaaaactgtatctttttgcatattttagaCACTGTTTTCAGTgctgttgatgtatttcctctttttcatGTATTaactccagtttttttttttccaagaatgTTTAGTTGAATCTAGAGTCCTAAACTGGTTTGCAGACTGTTTGTCTGTCTAACCCGTGTTTTCATGGCTCTGTTGGTATGACACTTGTCTCGGCATCCCCTTGCCTCCTGCAGAGAGGCCAAACAAGGCTGTCGGTTTGTCGGTTTGTATTTTGCGCTTGTGAGAAGTGgatcaaaaaaaagaaagaaaaaaaataacaaaatgtttgtGGATTTGTGGGAAAGACCCCTTAAGTCCTTATAAAGCAAAGTAAACAATGACGTTATGAATGAGTTATGTGTGTCTTTTGCACTAATTTAATAAAGCCGTTACTGTACTTCCCACca

Function

symbol description
cdh13 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within apoptotic process involved in blood vessel morphogenesis. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Human ortholog(s) of this gene implicated in breast cancer (multiple); lung non-small cell carcinoma; reproductive organ cancer (multiple); and urinary bladder cancer. Orthologous to human CDH13 (cadherin 13).

NR:

description
PREDICTED: cadherin-13-like isoform X2

GO: NA

KEGG:

id description
K06808 CDH13; cadherin 13, H-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305493.1 True 3416 mRNA 0.48 15 10706871 11042272

Neighbor

gene id symbol gene type direction distance location
zgc:173742 zgc:173742,LOC108264272,LOC108415671,LOC107684664,LOC107749320,LOC107553995 coding downstream 64821 10586922 ~ 10642050 (-)
kcng4a kcng4,kcng4a,LOC107553964,LOC107738382,LOC107749318,LOC107670163,LOC107684667 coding downstream 201748 10477186 ~ 10505123 (-)
si:dkey-246g23.4 NA coding downstream 253713 10448986 ~ 10453158 (-)
wfdc1 wfdc1,LOC102778323,LOC107553961 coding downstream 267000 10425740 ~ 10439871 (-)
mical3a mical3a,LOC108264267,LOC108414616,LOC107673136,LOC107559327 coding downstream 307996 10295851 ~ 10398875 (-)
si:dkey-238o13.4 pecr,LOC108263951,LOC108425018,LOC107553987,LOC107670155,LOC107684673,LOC107583841,LOC107749293 coding upstream 127530 11169802 ~ 11172027 (-)
tshz3a LOC108263930 coding upstream 163377 11205649 ~ 11217476 (-)
mtss1la LOC108264558,LOC108416831,LOC107749287 coding upstream 183278 11225550 ~ 11252652 (-)
mapk12a mapk12a,LOC108264559,LOC103040333,LOC108417318,LOC107749284 coding upstream 218454 11260726 ~ 11269493 (-)
selenoo1 selenoo coding upstream 228980 11271252 ~ 11279969 (-)
G97246 mlycd non-coding downstream 45819 10657192 ~ 10661052 (-)
G97225 NA non-coding downstream 185874 10520795 ~ 10520997 (-)
G97224 NA non-coding downstream 187566 10519097 ~ 10519305 (-)
G97204 NA non-coding downstream 227584 10479067 ~ 10479287 (-)
G97173 NA non-coding downstream 335546 10370748 ~ 10371325 (-)
G97601 NA non-coding upstream 145223 11187495 ~ 11188023 (-)
G97607 NA non-coding upstream 148369 11190641 ~ 11190840 (-)
G97831 NA non-coding upstream 353844 11396116 ~ 11477114 (-)
G97932 NA non-coding upstream 638457 11680729 ~ 11696665 (-)
G97931 NA non-coding upstream 648725 11690997 ~ 11693079 (-)
si:dkey-246g23.2 pqlc1,si:dkey-246g23.2,LOC107749300,LOC107684666,LOC107553994,LOC107670153,LOC108415329 other downstream 124969 10527110 ~ 10581902 (-)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107587045 other downstream 412048 10266978 ~ 10294823 (-)
tmtc2b LOC108264714,LOC108414015,LOC107673141,LOC107738412,LOC107670376,LOC107722480 other downstream 788390 9822233 ~ 9918481 (-)
LOC113534661 NA other downstream 934851 9750882 ~ 9772020 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other downstream 1491056 9174655 ~ 9215815 (-)
pdf pdf,spata2l other upstream 130415 11172687 ~ 11179608 (-)
arntl2 arntl2,LOC107749276,LOC107686234 other upstream 543785 11586057 ~ 11610964 (-)
plekhg7 plekhg7,LOC107583891 other upstream 710253 11752525 ~ 11769986 (-)
sspn sspn other upstream 828636 11870908 ~ 11878204 (-)
admb NA other upstream 1269550 12311822 ~ 12345452 (-)

Expression


Co-expression Network