arf5 (arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491)


Basic Information

Item Value
gene id arf5
gene name arf5,zgc:77650,LOC108264180,LOC107599973,LOC108439765,LOC108439842,LOC107599983,LOC103033491
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 30808138 ~ 30811975 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034305495.1
ACGGTGGCCTCTGGCAGCGACGTGGCAGCGCGCATGCGCAAACTCTAACCGGCtgtaacagagagaggaaacagtgCAAGAGACGCGACATTTACTGAAAGAATTAAAGCCTAAAGTGTAGAAATTATCGAATTATAATGGGTTTAACAATTTCATCCATCTTCGGGAGACTTTTTGGGAAGAAGCAGATGAGAATATTAATggTGGGTTTGGACGCagcaggaaaaacaacaatacTGTACAAACTGAAGCTGGGAGAAATCGTCACAACCATTCCTACCATCGGGTTTAACGTGGAGACGGTGGAGTACAGGAACATCTGCTTCACCGTGTGGGATGTTGGTGGTCAGGATAAAATCCGTCCGCTGTGGAGACACTACTTCCAGAACACTCAGGGTCTGATCTTCGTGGTGGACAGTAATGACCGAGAGAGAGTGGCCGAGTCTGCTGATGAGCTCTCCAAAATGctgcagGAAGACGAGCTGAGGGACGCCGTGCTGCTGGTGTTCGCTAACAAACAGGATCTGCCCAACGCCATGCCGGTCAGCGAGCTCACAGATAAACTGGGCCTGCAGAGTCTGCGCAGCCGaacgTGGTACGTTCAGGCCACGTGCGCTACACAGGGAACCGGGCTGTATGAAGGACTGGACTGGTTATCCAACGAGCTGTCCAAACGCTAGTGCTGTccatcacctcacacacacacacacgagagagagagagagagagagagagagagagagcacgctGGAGTTTTCAGATCATTACTCTATAGACTCTgttataaagagagagagagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgagtgagagagagatgcggTGATGAGGAGCCATGTCTGTCTTTACTTTTTTAcacttcatttctctttttgctgcgTCTGAATCACGGTGTTTTATATGTGATGATGCTTTAAACTGCATGTTCACTGATAACTGTGAGAGATTCATCAGACCTCACGACCTTCGCATTTTAACGTCGGAGTACACTGCTACGACTCATCACTCAAAAATACTCCGAAGTCTTCTTTTCCCCcccaaataaaaacagcagatgagtcAGTCGAcgtatgaatctggaatgattgacagctgcgtagggttttgaactctctgatattaccTGTCcctctggaagccccgcccccttcctccaTCTCACCTTAGTAATCTCTCGTCTCGTATTGATTTTCCCGATGGAGAGATACGCAGACGCAAAGTCCTCACTTTCTGTCACGGGAAACAGAAATTAAACCTGACAGTGTGTGTTCCACTCAGCTAAGATTACACACAGATTATATCTAATATTATATCATCAGTAAATTAAACGGGATTTATTAGGGATTAACTGAAGATTTTtggccaaaaagaaaaaaaaatggacgggaaaaaa

Function

symbol description
arf5 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in axial chorda mesoderm; axis; central nervous system; notochord; and polster.
zgc:77650 Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in notochord and polster. Orthologous to several human genes including ARF5 (ADP ribosylation factor 5).

NR:

description
PREDICTED: ADP-ribosylation factor 5

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07939 ARF4; ADP-ribosylation factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034305495.1 True 1433 mRNA 0.47 6 30808138 30811975

Neighbor

gene id symbol gene type direction distance location
terb1 terb1 coding upstream 12336 30760185 ~ 30795802 (+)
syt1b syt1,LOC108264166,LOC108427563 coding upstream 69566 30733459 ~ 30738572 (+)
si:dkey-30c15.17 LOC108264160 coding upstream 80183 30720852 ~ 30727955 (+)
glipr1b LOC108264173 coding upstream 89992 30711773 ~ 30718146 (+)
cers3b LOC108264168,LOC103029792,LOC108426826 coding upstream 108756 30689935 ~ 30699382 (+)
LOC113526343 arf5,zgc:77650,LOC108264180,LOC108439765,LOC108439842,LOC107599983,LOC103033491 coding downstream 4572 30816547 ~ 30825966 (+)
pgr pgr coding downstream 163734 30975709 ~ 30985960 (+)
G107629 bbs10 non-coding upstream 78481 30728834 ~ 30729657 (+)
G107591 calu,calub,LOC108438561,LOC107733278,LOC107600067,LOC107662890,LOC105939814,LOC102225510 non-coding upstream 245237 30557623 ~ 30562901 (+)
G107382 LOC108264175,LOC108437702 non-coding upstream 352755 30452856 ~ 30455383 (+)
G107387 NA non-coding upstream 378915 30361590 ~ 30429223 (+)
G107381 NA non-coding upstream 451589 30264964 ~ 30356549 (+)
LOC113526871 NA non-coding downstream 16101 30828076 ~ 30829663 (+)
G107657 NA non-coding downstream 35984 30847959 ~ 30848474 (+)
G107658 LOC108264165 non-coding downstream 38566 30850541 ~ 30854105 (+)
G107659 NA non-coding downstream 42638 30854613 ~ 30868459 (+)
G107660 ppp1r37 non-coding downstream 48223 30860198 ~ 30861847 (+)
dnaja2b dnaja2l,LOC103026191,LOC108438176,LOC107735561,LOC107686561,LOC107705812,LOC103369280 other upstream 309823 30394260 ~ 30498315 (+)
cmc2 cmc2,LOC107711752 other upstream 2004066 28799464 ~ 28804072 (+)
def8 def8 other upstream 2646269 28146263 ~ 28161869 (+)
uraha LOC108264586,LOC108417536 other upstream 2737453 28066882 ~ 28070685 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other upstream 2841830 27944790 ~ 27966308 (+)

Expression


Co-expression Network