LOC113527007


Basic Information

Item Value
gene id LOC113527007
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19980069 ~ 19980259 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402829.1
TTCGCTTCTCAGCCTTTTGGCTAAGATCAAGTGTAGTATCtgttcttatcagtttaatatctgatacATCCCCTACCTGGGGACCATATATTAAATTGATTTTTGGAACAAGGAGATGGAATAGGGGCTTGCTTCATCCACTCCACGCATCGACCTGGTATTGCAGTACTTCCAGGAATGCTGCACCCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402829.1 True 191 ncRNA 0.44 1 19980069 19980259

Neighbor

gene id symbol gene type direction distance location
pik3c2a pik3c2a,LOC108264692 coding downstream 483076 19407050 ~ 19496993 (-)
dhx34 dhx34 coding downstream 646639 19309888 ~ 19333430 (-)
znf710a znf710 coding downstream 1238345 18734427 ~ 18741724 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding downstream 1455843 18282619 ~ 18524226 (-)
LOC117597582 NA coding downstream 2254749 17720545 ~ 17725320 (-)
LOC113526513 cxcr5 coding upstream 71073 20051332 ~ 20054436 (-)
nectin1b nectin1 coding upstream 234883 20215142 ~ 20292323 (-)
si:ch211-132b12.7 NA coding upstream 382071 20362330 ~ 20377332 (-)
ccnp NA coding upstream 402551 20382810 ~ 20389633 (-)
vaspb vasp coding upstream 442014 20422273 ~ 20453147 (-)
G102129 cdon non-coding downstream 12292 19943711 ~ 19967777 (-)
G102082 NA non-coding downstream 125306 19854530 ~ 19854763 (-)
G101955 NA non-coding downstream 394230 19585640 ~ 19585839 (-)
G101939 ciapin1 non-coding downstream 396300 19500337 ~ 19583769 (-)
LOC113526834 NA non-coding downstream 462307 19514799 ~ 19517762 (-)
G102146 NA non-coding upstream 18704 19998963 ~ 19999181 (-)
G102147 NA non-coding upstream 19842 20000101 ~ 20000323 (-)
G102224 NA non-coding upstream 109332 20089591 ~ 20092328 (-)
G102225 NA non-coding upstream 112725 20092984 ~ 20093802 (-)
G102270 NA non-coding upstream 264076 20244335 ~ 20290991 (-)
G101178 NA other downstream 1783263 18187447 ~ 18196806 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 4622506 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 5633061 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 6417495 13550680 ~ 13562574 (-)
G98770 NA other downstream 6927758 13045823 ~ 13052311 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 415607 20395866 ~ 20416574 (-)
G102566 NA other upstream 973343 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 1015082 20995341 ~ 21013100 (-)
si LOC108264758,LOC108431149 other upstream 2251189 22231448 ~ 22306769 (-)
mmp23bb LOC108264351,LOC108440601,LOC107576217,LOC107758054,LOC107672246,LOC107670598,LOC107717605 other upstream 3610686 23590945 ~ 23610448 (-)

Expression


Co-expression Network