LOC113534479


Basic Information

Item Value
gene id LOC113534479
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15433395 ~ 15436916 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403500.2
AGCAGTTTCAAACAATAGCAAGGAACGGACACTGCTTGCCAAGACTCAGGCCTGGTCTATGCAATCcatttctccctccctctctttttctttttctctctatgtGCTTGACGTCCATAATAAAACCTTAATCTTTCAACTTTCTCCTGAGTCAGCAGTGTGAGCACACCAGTGGCAGCGCCGTGCCTCCATGGCTCCGGTTCTTTCCTATATGTACACTCTGCTTCAAACGCTTTCTCATAAGAACTTTAAATTACTCCTCCTGAGGAAAAGCTTTCTTGGCTGTGAAAGGACTGAACAGAGCTGGACTATTTCGTACAGCCAACTTAGACCAGTCACACAGCACTGAGCGCCGAGCCAGCCCTGACATCAgtagtgagaaagtgagaccACTGAGGAGGCACAGAGCTACGCCAGCAAGGGACTTGATCTGAAACCAGCACCGAAATCTTTAAATTGCTATGAGACGGTGGTCATAGACCAAGATTGGGAACTGTTAAAGAGAAGTGAATCAAGcagaattaaaatgtattgaattAAAGAACATGGCTGATCAAACATAAAAGGCCCCCTTCCTCATTTAACATGCTCCTGAATCCAGAGCCCTTATCTTTACATAGCTGCTGTCTCTTTAGCCATTCCCTGGCAACTGAGCTGCACTTCATCTCTTTCTGTGGCACAGTTAGTAAGACGGActactgcatacacacattttctccTGGGATGTTAGTGATAGTCCCTTGCTCTCTCTAAATCTCATAGAGAGCTAAGCTGTGACCAGAGCTGTCTGTcacttaagtgtgtgtgtctgtgtgtgtgtgtgtgtgtggattgtgtCACCACAGAGATTCCACTATCATGTCAAGCACTGTTTCAATTAGCACCCCCTTTTCCAGCCTTCCTTCATCAGCTAATGAGACCCACTCCACTGAGACCTGTCCACCGCACCTCTCAACTAGCCAGCCACTGACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403500.2 True 973 lncRNA 0.46 3 15433395 15436916

Neighbor

gene id symbol gene type direction distance location
pard6a pard6a,LOC107692936 coding downstream 233147 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 301189 15121047 ~ 15132206 (-)
nutf2 nutf2 coding downstream 313677 15105315 ~ 15119718 (-)
edc4 edc4,LOC107733561,LOC107726309 coding downstream 328285 15075874 ~ 15105110 (-)
nrn1la nrn1l coding downstream 360900 15043298 ~ 15072495 (-)
LOC113534617 LOC108264368 coding upstream 34713 15471629 ~ 15473015 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding upstream 49097 15486013 ~ 15499252 (-)
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding upstream 638031 16074947 ~ 16083613 (-)
LOC113534689 NA coding upstream 1144446 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 1244006 16680922 ~ 16741071 (-)
G99941 NA non-coding downstream 115528 15317509 ~ 15317867 (-)
G99915 ctcf non-coding downstream 133817 15297605 ~ 15299578 (-)
G99801 NA non-coding downstream 252483 15176175 ~ 15180912 (-)
G99784 NA non-coding downstream 259961 15171311 ~ 15173434 (-)
G99775 NA non-coding downstream 264969 15160203 ~ 15168426 (-)
G100023 NA non-coding upstream 40585 15477501 ~ 15478166 (-)
G100027 NA non-coding upstream 45913 15482829 ~ 15483037 (-)
G100028 NA non-coding upstream 47087 15484003 ~ 15484301 (-)
G100034 NA non-coding upstream 109660 15546576 ~ 15548763 (-)
G100007 NA non-coding upstream 166343 15603259 ~ 15603536 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 75832 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 1086387 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 1870821 13550680 ~ 13562574 (-)
G98770 NA other downstream 2381084 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 3009417 12420437 ~ 12423978 (-)
G101178 NA other upstream 2750531 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 4543153 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 4958950 20395866 ~ 20416574 (-)
G102566 NA other upstream 5516686 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 5558425 20995341 ~ 21013100 (-)

Expression


Co-expression Network