LOC113534800


Basic Information

Item Value
gene id LOC113534800
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 16088944 ~ 16134169 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403526.2
TAGGCAGGAATTCTGGCTGCCGTCGCTGACTGCTCCACACCACCTGTTACAGAAGGCAACATGTGCTGAGTGTATTAACCTTTCTGCTACTGGGACTTAACTGCTGGCCACAGCTAGGCCAGCACCCTAGTATGGATGATTCCGGCACCATTTAATACTACACCGAGCTGTTTCTCAAGAACCGTAAAGGTGATCAAGCTGGGTGCAtctatgtgctaatctATGCGGGCTGGGTGGAGTCAACAAGAACTACTTACAACTCGTTCTTTAAACCACTGATAATGAAGGCTTTCGAGAAACACTCACAAAACAGGCTCATACATAGCATACATCCTTCTTTAAGTTATTTGTTATTCACTAAGATTCATCATTATTAGTAAACTCACCTATGGTTGATTAATGCACCCAAACTTATTGTACTTCACCTTGTTCCTGTTACATAGTAAACCTGGAGTATCTGTGCCAAAGCAAATATCTTGACTGAAGTCCTGGAGAGCCAGCCACATGATCATTTCAGGGCGGCAACGGAGCTTCACCCAGGCCTGACTCTCTTCAGTGGAGACTCAGataaacattacacattctGTCTGGGTAACTGATCCCAAATCTTATTTGACAGTGGGTGTTTTACTGCTGACACTTCACAAGCTTCCTTAGAGTAGCTGAGCCTTCATGGCCATTTTGCAAATACCACAACTCAAAACGCATTAAATCTCTTGTCAAGTTTGTGAGACTGCCTCACTCTGTTGTGCCCCcacttgtgttgtgtgtttgtcctcatttgtttgtgtattgcTCTATGTTGTGCTTTGTCTCCTTCTTCAGTGTGCCCTCGATGacggaagaaaagaaaaaaacctgttGATTATGCTTTTGAATTATGAACATTTGTGCAGAACTATACAAGTATACAGACTTCTTGACAAATTGCACCTGTAAAATGCAGCAGAATACTAAAATCTACAAATATCCTGGTGTGATCAGCTAGGCTAAGAAAGTAGGCCTATCCAGATTAGAGGATGACAGAGATGGATGAttaggaaataataataataataataataataataataataataataatgttattaattattactgttAATGAGAAACAGTTATTCTAAACACTGGGTGGgctacacactacacagacGTGTTGAGCTGCATAATAACATGCATAATCTTACCACCAGTTTCTTACTACTGCcaataagaaatatgaaactTGCAAGTACCTCTGCATGATGGGAAACTCTAGTGAcactattatatattttttaataaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403526.2 True 1286 lncRNA 0.40 3 16088944 16134169

Neighbor

gene id symbol gene type direction distance location
nr2f2 nr2f2,LOC108264816,LOC107549018,LOC107690378,LOC102227842,LOC107388818,LOC106930729,LOC105023478,LOC100705923,LOC106573769 coding downstream 5331 16074947 ~ 16083613 (-)
hsf4 hsf4,LOC107690412,LOC107583721,LOC107596914,LOC107715602 coding downstream 589692 15486013 ~ 15499252 (-)
LOC113534617 LOC108264368 coding downstream 615929 15471629 ~ 15473015 (-)
pard6a pard6a,LOC107692936 coding downstream 888696 15177211 ~ 15200248 (-)
tsnaxip1 tsnaxip1 coding downstream 956738 15121047 ~ 15132206 (-)
LOC113534689 NA coding upstream 447193 16581362 ~ 16610310 (-)
chd2 chd2,LOC107690375,LOC107715217 coding upstream 546753 16680922 ~ 16741071 (-)
LOC117597525 NA coding upstream 804722 16938891 ~ 16944430 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding upstream 954472 17088641 ~ 17307902 (-)
alpk3a LOC108264806,LOC104964022 coding upstream 1288192 17422361 ~ 17478285 (-)
G100179 NA non-coding downstream 149615 15939123 ~ 15939329 (-)
G100154 NA non-coding downstream 225165 15863580 ~ 15863779 (-)
LOC113534668 NA non-coding downstream 362587 15690281 ~ 15726357 (-)
G100072 NA non-coding downstream 433157 15653386 ~ 15655787 (-)
G100007 NA non-coding downstream 485408 15603259 ~ 15603536 (-)
G100288 NA non-coding upstream 64325 16198494 ~ 16198698 (-)
G100298 NA non-coding upstream 98853 16233022 ~ 16233273 (-)
G100302 NA non-coding upstream 184120 16318289 ~ 16318736 (-)
G100307 NA non-coding upstream 215288 16349457 ~ 16349787 (-)
G100309 NA non-coding upstream 222429 16356598 ~ 16356815 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 731381 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 1741936 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 2526370 13550680 ~ 13562574 (-)
G98770 NA other downstream 3036633 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 3664966 12420437 ~ 12423978 (-)
G101178 NA other upstream 2053278 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 3845900 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 4261697 20395866 ~ 20416574 (-)
G102566 NA other upstream 4819433 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 4861172 20995341 ~ 21013100 (-)

Expression


Co-expression Network