LOC113538061


Basic Information

Item Value
gene id LOC113538061
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18802636 ~ 18816962 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403813.2
cccCATAGTATACTCCATAGTATATATACATTCCCTTTGAATTTTGGCAGGCTACATATGCAATACCGAGGAAGTGAAATACCAAACGGGccATTCCAGTGATGCCAATGTGGATGGATCGGAAACAGAAGTAGACATGGTGGTATACCTAGGTCATCTGTGACGTGAACAAAGAAAGCTGCAAAACACCTGGCTGTTAGACACCTGTGAGGACAGCAGGAGCAGTGAGACACCTGTAAAACACAGCAGGAGCAGTGAAACACCTATGAGGACAGAAGGAGAAGTGAGACACCTGTGAAGGCAGCAGGATAGAGGTGACAGAGAATGTGGAAATGGATCTGTGTCACTCCATCATTGCACTACTGAGACATTGCACCTGGAACAAAGAGACCTTGCAAAAATGGGGTAACCATTCTATGAAGACGGCAATCAGTTCAGGATCCTGAAGAGTACACCATATTCTCTTATCACCATGGTCAAATCAGACCTTCGTAAGAGGCTGCAAGGAGAGCACCTAGCCGCCTGCCTGAGGGTCATCGtcaatgggccaagcccaaggGAATTCAACTACAAAAGGGcattagaaatgtttttctcAAAGCCCAGGAAAATTAAATATCCAAATTCAGGGTGTAAAGATTGCCAATAGGGAGAGTTGATCAATACCGcatccagtattttttttattttctaaaaaataaatcagttcacCACAGGTAACCACTTTTGCTTCATTTCTTTGATGCATCAAATGTATGCTCTatttgattttgtgttttgacCATTTGTGAACCACGTTAA

Function

GO: NA

KEGG:

id description
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403813.2 True 801 lncRNA 0.43 4 18802636 18816962

Neighbor

gene id symbol gene type direction distance location
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding upstream 69822 18681517 ~ 18732814 (+)
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 561027 18224061 ~ 18241609 (+)
reln reln coding upstream 614152 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 1200462 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1260983 17530434 ~ 17541653 (+)
zgc:162879 NA coding downstream 343024 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 462188 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 478530 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 537164 19354126 ~ 19360323 (+)
lmo2 lmo2,LOC107554475 coding downstream 701641 19518603 ~ 19526473 (+)
G101444 NA non-coding upstream 49349 18753081 ~ 18753287 (+)
G101436 NA non-coding upstream 59345 18743080 ~ 18743291 (+)
G101422 NA non-coding upstream 200450 18601922 ~ 18602186 (+)
G101417 NA non-coding upstream 204930 18597491 ~ 18597706 (+)
G101411 NA non-coding upstream 232871 18568998 ~ 18569765 (+)
G101583 NA non-coding downstream 52138 18869100 ~ 18869377 (+)
G101586 NA non-coding downstream 55280 18872242 ~ 18872458 (+)
G101593 NA non-coding downstream 88083 18905045 ~ 18905327 (+)
G101603 NA non-coding downstream 307062 19124024 ~ 19125229 (+)
G101803 NA non-coding downstream 423154 19240116 ~ 19240762 (+)
G101466 NA other upstream 8363 18793635 ~ 18794273 (+)
G101434 znf710 other upstream 62638 18738343 ~ 18739998 (+)
G101419 NA other upstream 203261 18598714 ~ 18599375 (+)
G101403 NA other upstream 250912 18551446 ~ 18551724 (+)
LOC113539654 NA other upstream 1309544 17489546 ~ 17493092 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 140466 18957428 ~ 19122497 (+)
G101602 NA other downstream 305650 19122612 ~ 19123877 (+)
cdon cdon other downstream 1103087 19920049 ~ 19969787 (+)
bcl9l bcl9l,cxcr5,LOC108264003 other downstream 1187394 20004356 ~ 20053142 (+)
ddx6 ddx6,LOC107691843,LOC107670620,LOC107572719 other downstream 1260003 20076965 ~ 20092932 (+)

Expression


Co-expression Network