LOC117597540


Basic Information

Item Value
gene id LOC117597540
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17038051 ~ 17039276 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578316.1
TCTGAAGGCaatggggagaacaaagAGTGCCCATGGAGAACTGATATACAGGGATGTCAGCTGCTTGTGCACAACAACACAAAATCTGAACTGTGGGTGCTTTAATGCAAAGCATTTCAAGTTCCACATTCAGCAGACAGCTCCCATGGCTCCCACAATGACAGAAGTTCAGTGGCCTTGAAGTTGTTGGCAAATGGTGTGTGCTGAAGTATGATGGTGATCTATACCCTGGTGTCATCACAGATACAAGTGAAACACATATTGAGGTCCGTTGCATGCAAAAGATTGGATTCAACAGGTTTTTCTGGCCAGCCCATGAAGACATCCTTTGGTACTTGTTTGAGGACATTGTGTGTATCATCCCTCCCCCGAGGCCAGTCACAGGTCGTCACATGGAAATTGACAGAGAAATCTGGGCCAAACTGCAGAAGTCTTCTTAGAAAGGGAGCCAGAAGCACCCACGGATGCTGACGGAAAGGACATAGTTCCACCACATTCTCAATCtttgttctctctgtttctccctctttctcttcttctctttccatcTTGATTGTGATGGACTACATGGACATAACACATTCCTtcagaaatctctctctctcacacacaggctatgtacacacatgcacacacacaaacgcacacagaGTGTCTGGATATTCATTCCTGTTACGCACTGTTCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578316.1 True 687 lncRNA 0.46 3 17038051 17039276

Neighbor

gene id symbol gene type direction distance location
ppp1r15b LOC108263894 coding upstream 54075 16978935 ~ 16983976 (+)
srpra srpra,LOC107670634,LOC107669606,LOC107565095,LOC104942062,LOC107576893,LOC108432175 coding upstream 109409 16838875 ~ 16928642 (+)
slco3a1 slco3a1,LOC107715617,LOC107690372,LOC107601651,LOC107693030 coding upstream 221779 16764695 ~ 16816272 (+)
LOC113534621 NA coding upstream 527072 16500760 ~ 16510979 (+)
LOC113534692 NA coding upstream 777878 16259445 ~ 16260173 (+)
blm blm coding downstream 2081 17041357 ~ 17065819 (+)
slc28a1 LOC108263923 coding downstream 323849 17363125 ~ 17378340 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding downstream 491158 17530434 ~ 17541653 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding downstream 542607 17581883 ~ 17602174 (+)
reln reln coding downstream 722241 17761517 ~ 18188484 (+)
G100499 NA non-coding upstream 13823 17010715 ~ 17024228 (+)
G100480 NA non-coding upstream 65813 16971830 ~ 16972238 (+)
G100379 NA non-coding upstream 98323 16938735 ~ 16939728 (+)
G100370 NA non-coding upstream 214949 16822368 ~ 16823102 (+)
G100362 NA non-coding upstream 277517 16760311 ~ 16760534 (+)
G100495 NA non-coding downstream 48678 17087954 ~ 17090706 (+)
G100532 NA non-coding downstream 111677 17150953 ~ 17152232 (+)
G100533 NA non-coding downstream 115430 17154706 ~ 17154971 (+)
G100544 NA non-coding downstream 136882 17176158 ~ 17176370 (+)
G100846 NA non-coding downstream 951126 17990402 ~ 18068569 (+)
rgma NA other upstream 357258 16657601 ~ 16680793 (+)
G100345 NA other upstream 436984 16600257 ~ 16601067 (+)
G100306 NA other upstream 688264 16349457 ~ 16349787 (+)
carmil2 carmil2,rltpr other upstream 1691905 15300482 ~ 15346146 (+)
G99341 synm other upstream 2513571 14520801 ~ 14524480 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 361150 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 450270 17489546 ~ 17493092 (+)
G101403 NA other downstream 1512170 18551446 ~ 18551724 (+)
G101419 NA other downstream 1559438 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 1699067 18738343 ~ 18739998 (+)

Expression


Co-expression Network