LOC117597584


Basic Information

Item Value
gene id LOC117597584
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 25340623 ~ 25342308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578347.1
CTACATGCACTGGTATAATTTTTCACAGGGGAGTCAGAGCATCTGTATTCAGCATACATGTAACATAGTGCTTTGTCTGGTAAAAGTAACAGTGATGCAACACAAGCATCAGCAGCAGGGATATATCTAAGACTCACCTGCTTTTCATGTGATCTGACGTGTACAATGGAACCCAGCTGTGGAAAAGGTTAGGGCTTGCTCATTACAATGTGGACCCACTCAAAAATGAAAAGCTGTTAATTAAATTAGCAGATATCCCAGCTAAGAATAGCAGAATCAGCAGTAAACAATGTGTGGTATGAACGTGGAGAACTCTTAAAAAACAGAGTGAGAACCATCTCAATGAAGTATGTGATAAATATTAAGTACATAGCATGGATGAGGTCACCGGCACCATGAGAAAAGTGTTCCCAGAACCTGTAGAAGTGTACATATGTCCaaagtacaaaaacaaaaacaaacaaacaaaaaaacccagctaCTCAGATTTACAAGTGCGACTACGAGTCAgtagtgttttaaaataatgctcATAACACCAATgtagaatgaaaataaaaggagGATAGCCTTGGAGGACACCTGCAGCGCGTGTAGACAAGAGTTGCGAGCTGCTAGCGCAGAGCTCTGCAACATGTTCATGTAGACGTTTCCTGtgggtgtccatgtgggtttcctctggttacatcccacctcccagaaacatgcagCCACCAGATGTCTCTCAAGTTCTTGAGTATGTCCTATTCCTTAGATGTTTGGATCTTCCCCAAAAGTTGGCTTTTGAATACTGCAAACAGATGGAGTCCATGCAGAGGATAAACAGGCTTGGGAAACACTAATGATAAAATGATGTGAACGCTTTTTCAGTTCTATGCAAGGTCATAACACAGGCTTGAATCTTATTAATTAAGATATGATAACCATACTAATGAATTTCACAGTTCCTGGCACATCACAGGGTCTGTTTACAATgtcatatttttgaaaaatgataaTTCTGTTAAACAGTATATTCAGCAGCAGGGCATGCTTTGTTTTATTAGAGAGATTGCTCGAATTTTCTTTAAACTGGCTTTATAATTAAGTGGGTTGATCTTAGCCTTAAACAGTgtgttaaaaatgtagaaataggATCTATGGTACATATAGCAccatgtgtgattgtgtgatgtgtgaacAACTACTTATTTTACTACAATTTCCTAGAATTAAGCATTTTGAGtttgccctctagtggtcaACTGATCAACTgtatattactttatttttgtctgtctgaGCTGCCATACCACATCAAAAGGATTCTTTCACATAacttcattaataatttaacaatcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578347.1 True 1342 lncRNA 0.38 3 25340623 25342308

Neighbor

gene id symbol gene type direction distance location
yif1b yif1b coding upstream 58403 25268893 ~ 25282220 (+)
si:ch211-136a13.1 LOC108264834,LOC105023074 coding upstream 73766 25250342 ~ 25266857 (+)
hnrnpul1 hnrnpul1,LOC106603088 coding upstream 185524 25140152 ~ 25155099 (+)
opa3 opa3,LOC107662143,LOC107560148,LOC107554481,LOC107705493,LOC107758233 coding upstream 201062 25137014 ~ 25139561 (+)
exosc5 exosc5 coding upstream 300534 25035513 ~ 25040089 (+)
dusp8b LOC108264845 coding downstream 425110 25767418 ~ 25777506 (+)
mob2b mob2,mob2b,LOC108264656,LOC108430083,LOC107656971,LOC107722284 coding downstream 446330 25788638 ~ 25839289 (+)
LOC113526365 scamp5b,LOC108264657,LOC108430449,LOC104960097,LOC107722282,LOC107599784,LOC107703195,LOC107589318 coding downstream 530174 25872482 ~ 25878200 (+)
insyn1 c4h15orf59 coding downstream 666794 26009102 ~ 26083273 (+)
ubl7b LOC108264398 coding downstream 960812 26303120 ~ 26311502 (+)
G104751 NA non-coding upstream 94758 25245664 ~ 25245865 (+)
G104748 NA non-coding upstream 96745 25243481 ~ 25243878 (+)
G104739 NA non-coding upstream 97318 25242800 ~ 25243305 (+)
G104522 NA non-coding upstream 231657 25013112 ~ 25108966 (+)
G104554 tmem91 non-coding upstream 279323 25057875 ~ 25061300 (+)
G105118 LOC108264774,LOC108430572,LOC107722288,LOC107740351,LOC107656970,LOC107692473,LOC107569907 non-coding downstream 561518 25903826 ~ 25905288 (+)
G105320 NA non-coding downstream 977701 26320009 ~ 26323500 (+)
G105446 NA non-coding downstream 1171128 26513436 ~ 26516780 (+)
G105450 NA non-coding downstream 1183612 26525920 ~ 26527807 (+)
G105449 NA non-coding downstream 1189027 26531335 ~ 26532088 (+)
G104781 NA other upstream 25410 25294899 ~ 25315213 (+)
LOC113526839 NA other upstream 100410 25233625 ~ 25240213 (+)
cstf3 cstf3,LOC107758036,LOC107671440 other upstream 1577578 23739502 ~ 23763045 (+)
G103830 NA other upstream 1710900 23615103 ~ 23629723 (+)
serp1 NA other upstream 1764910 23572551 ~ 23575713 (+)
G105569 LOC108264538,LOC103044212,LOC105015671,LOC107595343,LOC107668482,LOC107665073,LOC107712845 other downstream 1488670 26830978 ~ 26833427 (+)
G105898 LOC108264731 other downstream 1869081 27211389 ~ 27214570 (+)
ddx11 ddx11,LOC107705769,LOC107734845,LOC107686596,LOC107662896 other downstream 2183815 27526123 ~ 27545526 (+)
LOC113526832 LOC108263905,LOC108435606,LOC105906450 other downstream 2602482 27944790 ~ 27966308 (+)
uraha LOC108264586,LOC108417536 other downstream 2724574 28066882 ~ 28070685 (+)

Expression


Co-expression Network