LOC117597598


Basic Information

Item Value
gene id LOC117597598
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 15607970 ~ 15609103 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578360.1
acacacacacacacacacacactgtatattacagTCACTTCAAGCGCGTGACCCGAAGCTAAAAGAACCAAAATGTgtctaaatatcaaatatcaggCATctaaaatgtctcctcacaaaTTTCTCCCAAATAAACCAGCCTATAAAGGGAAGACGACACAGACTACTGGAGGCCCTCTTTCTTTCCAAGGCTGGTGACATAACCATTATGCATATACTCGCCGCTCAGCATGAggCGCTTCCGTGGAAGACCAGACGTGACATAATATCTAAAAAGTGATACTCTCCTCCGCTGAGCGCGTGCCACTGTCCAGCTGCAATGGCGCCGAATAACAACGCGCGCGCGGGGAAAAGGGGCCGCACTCTGGAGATTAATTTGCGATaaaaacaagggaaaaaaacgCTAAATAATATATCAAAAAATACTATGGTTTAGACATATTAGACAATAATATAGTTTAGACATACTGACTACCTCTAAAACCACCGTAGACTGCCTGTTAAATAAAGTCTAAGGCTGTGAAATGGACATGGACCTGCTACAGCTACTAGCTACAGCTAACATGAGAGTATTAAACAGCAGGGTGAGCTCAGGTCACGTGGACCACTTTCTTGCAcatctaattggtcagaaaatgattcattttctgtatgagcagctctgacagtagtcccGGCTGTAATCCGCATCACAGATtgatattaatgcgctcattccaATACTACACTGTCATTTCTGGAGTGACATTGCCTCATTCAGAGGGCCGTGTATACTGGACCTAATATGAGGTGGACATTATCTAACAGTAAACTAATAAATacgtgctgttatttaacaaagaaaataaagacgtgtaattgttgacatggtgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578360.1 True 874 lncRNA 0.42 2 15607970 15609103

Neighbor

gene id symbol gene type direction distance location
gnao1a gnao1a,gnao1,LOC107715606,LOC108264367,LOC102196435,LOC100693875,LOC108249535,LOC107660763,LOC103367675 coding upstream 6066 15522791 ~ 15601904 (+)
nudt21 nudt21,LOC107660760,LOC107690386 coding upstream 125833 15477466 ~ 15482137 (+)
bcar1 bcar1 coding upstream 140194 15395103 ~ 15467776 (+)
cfdp1 cfdp1,LOC105419833 coding upstream 219023 15358403 ~ 15388947 (+)
ctcf ctcf,LOC107583725 coding upstream 308391 15291924 ~ 15299579 (+)
cbfb cbfb,LOC107715210,LOC107715607 coding downstream 4177 15613280 ~ 15653287 (+)
fan1 fan1,LOC107672326,LOC107726319,LOC107733573,LOC107694919 coding downstream 51889 15660992 ~ 15672334 (+)
mef2aa mef2a coding downstream 114320 15723423 ~ 15809116 (+)
mctp2a LOC108264697 coding downstream 203411 15812514 ~ 15856112 (+)
LOC113534692 NA coding downstream 650342 16259445 ~ 16260173 (+)
G99893 NA non-coding upstream 85246 15522020 ~ 15522724 (+)
G99854 NA non-coding upstream 139754 15467938 ~ 15468216 (+)
G99879 NA non-coding upstream 152931 15450819 ~ 15455039 (+)
G99819 NA non-coding upstream 384116 15223649 ~ 15223854 (+)
G99813 NA non-coding upstream 392254 15215391 ~ 15215716 (+)
G100079 NA non-coding downstream 62226 15671329 ~ 15734348 (+)
G100097 NA non-coding downstream 250156 15859259 ~ 15859474 (+)
G100102 NA non-coding downstream 254188 15863291 ~ 15863493 (+)
G100103 NA non-coding downstream 254587 15863690 ~ 15863915 (+)
G100160 NA non-coding downstream 259444 15868547 ~ 15868764 (+)
carmil2 carmil2,rltpr other upstream 261824 15300482 ~ 15346146 (+)
G99341 synm other upstream 1083490 14520801 ~ 14524480 (+)
skor1b skor1 other upstream 1565518 14035228 ~ 14042452 (+)
smad3b smad3,LOC108264458,LOC108424035,LOC107740443,LOC107755098 other upstream 1651619 13932539 ~ 13956351 (+)
G98972 NA other upstream 1818580 13785095 ~ 13789390 (+)
G100306 NA other downstream 740354 16349457 ~ 16349787 (+)
G100345 NA other downstream 991154 16600257 ~ 16601067 (+)
rgma NA other downstream 1048498 16657601 ~ 16680793 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other downstream 1791323 17400426 ~ 17443468 (+)
LOC113539654 NA other downstream 1880443 17489546 ~ 17493092 (+)

Expression


Co-expression Network