LOC117597605


Basic Information

Item Value
gene id LOC117597605
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18163999 ~ 18167769 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578369.1
AAGTAACTCTGGTCCATACTAAGCTGTTAACTGGGCTGTAGATGCTGGATTCATGGAACTGGAAAGGAGAACACCCCACATTATTCACCGAAGAGGGGAGACATGCAGACTGTACCAAGTGCCAAAGAAGCACTGGATGATGATCTTCACAGCTTTCTGCTTCACAGCCTACCACAATCTtttgcacaaaaatatatttgacaGTAAAGgTCAATGGTCCAGCCAGTCCACCTTCACCATGTACCCCTGACAATGAGTCTTTGTCAACTTAGCCTGCCCATTTGATCTTCAGCCAGAGTGCTGCGGGTCTTGTCTGACATTGATGCGGGCTTCATAATGTGCATGCCCTGTCAGAATATTCGGTATTAACCAAAAATGGTGAGTGTGGTGCCCCCTACAGGAGTTGCGAGGTATCACTTTGTAATCACTGAGAATTTGGCCCACAGAGAACAGTAGCATCTGTCTGCTGATGTTTTTGACATTGAGTTGACCACTCTCAGGAGTACCATTCATATTTTTGGGCCCATATTTAGCAATATTATAACCAAGTATAGTTATGTATTACATTCTTTTGTATGTGTTTCTTAATGGATAggacaaaagattttttttatctcagtGCCTAAAACCATCTCACCATTTGGGGTGAAGTGGGTATTGGCAGCTCAGGTAATAAAAGCCACTGTGATTGGACAAACCTCTGCCTGCCCAAGTAGATGGGGTAGTTTACTCAAGACCCATCCATCCCAACTAATATGAAGTGGGTTGTAAATATCTCAAAGCTCTCATTGAAGCTGGAATAATCCAAGAGTCTAAGCCCTCTTGTACATCTTCAGTTGCAGGGGAGGAGCTACCACCCCCCTAAGATCAGTGGTGCcccagtggagagagtggacaGTTTCTGGTAACTTGGTGTTCACATCACGCAGGACTTGTCATGGTCCTGTCATATCAACACCCTGGGGAAGAAGGCCTGTCAGTGACTTTACAACCTTAAACGCTTAAAGAACTTTAAACTGCCCTCTAAGGTTCTAAGGAACTTCTACACCTgcaccatcgagagcatcctgacagAAAGCATCACAGCCTGCTTTGGGAACAGCACCAAGCAGGATAGGTCGGCTCTCCAGAGGGTAGTGTGATCAGCTGAGTCTACCATCCACACTGAGCTCCCTGACCTATagtctattcaattcaa
>XR_004578371.1
AAGTAACTCTGGTCCATACTAAGCTGTTAACTGGGCTGTAGATGCTGGATTCATGGAACTGGAAAGGAGAACACCCCACATTATTCACCGAAGAGGGGAGACATGCAGACTGTACCAAGTGCCAAAGAAGCACTGGATGATGATCTTCACAGCTTTCTGCTTCACAGCCTACCACAATCTtttgcacaaaaatatatttgacaGTAAAGgTCAATGGTCCAGCCAGTCCACCTTCACCATGTACCCCTGACAATGAGTCTTTGTCAACTTAGCCTGCCCATTTGATCTTCAGCCAGAGTGCTGCGGGTCTTGTCTGACATTGATGCGGGCTTCATAATGTGCATGCCCTGTCAGAATATTCGGTATTAACCAAAAATGTTGCAGGGGAGGAGCTACCACCCCCCTAAGATCAGTGGTGCcccagtggagagagtggacaGTTTCTGGTAACTTGGTGTTCACATCACGCAGGACTTGTCATGGTCCTGTCATATCAACACCCTGGGGAAGAAGGCCTGTCAGTGACTTTACAACCTTAAACGCTTAAAGAACTTTAAACTGCCCTCTAAGGTTCTAAGGAACTTCTACACCTgcaccatcgagagcatcctgacagAAAGCATCACAGCCTGCTTTGGGAACAGCACCAAGCAGGATAGGTCGGCTCTCCAGAGGGTAGTGTGATCAGCTGAGTCTACCATCCACACTGAGCTCCCTGACCTATagtctattcaattcaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578369.1 True 1198 lncRNA 0.45 3 18163999 18167769
XR_004578371.1 False 740 lncRNA 0.48 4 18163999 18167769

Neighbor

gene id symbol gene type direction distance location
LOC117597582 NA coding downstream 438679 17720545 ~ 17725320 (-)
alpk3a LOC108264806,LOC104964022 coding downstream 685714 17422361 ~ 17478285 (-)
LOC113539712 frmd5,LOC108435336,LOC104917831,LOC107562133,LOC570903,LOC102299895 coding downstream 856097 17088641 ~ 17307902 (-)
LOC117597525 NA coding downstream 1219569 16938891 ~ 16944430 (-)
chd2 chd2,LOC107690375,LOC107715217 coding downstream 1422928 16680922 ~ 16741071 (-)
rasgrf1 rasgrf1,si:ch211-234p18.3,LOC107715192,LOC107690363,LOC107709805,LOC107691143,LOC108230026,LOC102298753 coding upstream 114850 18282619 ~ 18524226 (-)
znf710a znf710 coding upstream 566658 18734427 ~ 18741724 (-)
dhx34 dhx34 coding upstream 1142119 19309888 ~ 19333430 (-)
pik3c2a pik3c2a,LOC108264692 coding upstream 1239281 19407050 ~ 19496993 (-)
LOC113526513 cxcr5 coding upstream 1883563 20051332 ~ 20054436 (-)
LOC117597604 NA non-coding downstream 77028 18086655 ~ 18086971 (-)
LOC113537962 NA non-coding downstream 311939 17847025 ~ 17852060 (-)
G100771 NA non-coding downstream 445971 17717351 ~ 17718028 (-)
G100765 NA non-coding downstream 560341 17603229 ~ 17603658 (-)
G100764 kti12,LOC107562123 non-coding downstream 561229 17598489 ~ 17602770 (-)
G101383 NA non-coding upstream 357716 18525485 ~ 18528714 (-)
G101405 NA non-coding upstream 383672 18551441 ~ 18551725 (-)
G101406 NA non-coding upstream 384148 18551917 ~ 18552203 (-)
G101408 NA non-coding upstream 387107 18554876 ~ 18555193 (-)
G101409 NA non-coding upstream 391550 18559319 ~ 18559614 (-)
tmem170a tmem170a,LOC106573739,LOC107596918 other downstream 2806436 15347166 ~ 15357563 (-)
dennd11 kiaa1147,LOC107738692,LOC107686315 other downstream 3816991 14335936 ~ 14347008 (-)
c6h15orf39 c4h15orf39 other downstream 4601425 13550680 ~ 13562574 (-)
G98770 NA other downstream 5111688 13045823 ~ 13052311 (-)
akip1 LOC108264820 other downstream 5740021 12420437 ~ 12423978 (-)
G101178 NA other upstream 19678 18187447 ~ 18196806 (-)
LOC113527007 NA other upstream 1812300 19980069 ~ 19980259 (-)
akt2 akt2,LOC108264340,LOC107711004,LOC107557843,LOC107692744,LOC107714435,LOC107572728 other upstream 2228097 20395866 ~ 20416574 (-)
G102566 NA other upstream 2785833 20953602 ~ 20966910 (-)
sertad3 sertad3 other upstream 2827572 20995341 ~ 21013100 (-)

Expression


Co-expression Network