LOC117597609


Basic Information

Item Value
gene id LOC117597609
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 18545172 ~ 18545666 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578374.1
GACCGGTGAGGCTGCAAGTTGCGAGCGTGACACCCGTCTTAAAAGCCTGTGACGCGCCTCAGCGAGCGAAGAGACGGAGATTAGTCAGTAAGACAGCGTCTCTAGTGAAGCGATTATTTACAGATTCAGTCGAATCACCCGCGTGTTCAACCAGGGAATGGGGTCGTGGATCTCAAAGCGTGATTAAcgagacCGAAGCAGAGACCGAATCGGATAACGGCCCAGAACCGAATCAGGAAGCAGAGCGATGTCGGAGAGAGCGCCAGAGTCCCACTAGACCTCTGTTTAAGCGCAGGTTTCCTCAACGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578374.1 True 310 lncRNA 0.54 3 18545172 18545666

Neighbor

gene id symbol gene type direction distance location
cd81b cd81b,LOC107690398,LOC108435318,LOC107554556,LOC107715206,LOC107691158,LOC107746582 coding upstream 303563 18224061 ~ 18241609 (+)
reln reln coding upstream 356688 17761517 ~ 18188484 (+)
kti12 kti12,LOC107715238,LOC107725737,LOC107562123 coding upstream 942998 17581883 ~ 17602174 (+)
sec11a sec11a,LOC107691153,LOC107562127 coding upstream 1003519 17530434 ~ 17541653 (+)
slc28a1 LOC108263923 coding upstream 1166832 17363125 ~ 17378340 (+)
idh2 idh2,LOC107714782,LOC107691122,LOC106514339 coding downstream 135851 18681517 ~ 18732814 (+)
zgc:162879 NA coding downstream 614320 19159986 ~ 19239977 (+)
psmd8 psmd8,LOC108413249,LOC107672785,LOC107554985,LOC107714529 coding downstream 733484 19279150 ~ 19283703 (+)
spred3 spred3,LOC108264009,LOC107554984 coding downstream 749826 19295492 ~ 19308801 (+)
LOC113526414 LOC108263931,LOC108265089,LOC108443054 coding downstream 808460 19354126 ~ 19360323 (+)
G101388 NA non-coding upstream 7363 18537586 ~ 18537809 (+)
G101387 NA non-coding upstream 8063 18536901 ~ 18537109 (+)
LOC117597601 NA non-coding upstream 187081 18349124 ~ 18358091 (+)
LOC117597602 NA non-coding upstream 267349 18261723 ~ 18277823 (+)
G101183 NA non-coding upstream 339358 18205092 ~ 18205814 (+)
LOC117597608 NA non-coding downstream 2259 18547925 ~ 18548289 (+)
G101402 NA non-coding downstream 3379 18549045 ~ 18549253 (+)
G101411 NA non-coding downstream 23332 18568998 ~ 18569765 (+)
G101417 NA non-coding downstream 51825 18597491 ~ 18597706 (+)
G101422 NA non-coding downstream 56256 18601922 ~ 18602186 (+)
LOC113539654 NA other upstream 1052080 17489546 ~ 17493092 (+)
LOC117597546 LOC107707548,LOC106676627,LOC106676599,LOC106675328,LOC106675542,LOC107675252 other upstream 1101704 17400426 ~ 17443468 (+)
rgma NA other upstream 1864379 16657601 ~ 16680793 (+)
G100345 NA other upstream 1944105 16600257 ~ 16601067 (+)
G100306 NA other upstream 2195385 16349457 ~ 16349787 (+)
G101403 NA other downstream 5780 18551446 ~ 18551724 (+)
G101419 NA other downstream 53048 18598714 ~ 18599375 (+)
G101434 znf710 other downstream 192677 18738343 ~ 18739998 (+)
G101466 NA other downstream 247969 18793635 ~ 18794273 (+)
sema4ba sema4b,sema4ba,LOC107691120,LOC107556264,LOC107714785 other downstream 411762 18957428 ~ 19122497 (+)

Expression


Co-expression Network