G124387


Basic Information

Item Value
gene id G124387
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12688 ~ 23292 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU146887
GTTTtagcgtttgttccgtgttttagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttctagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccg
>TU146888
GTTTtagcgtttgttccgtgttttagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttcggtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttttagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgTAGCGTTTATTCGGTGTTTtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgCAGCATCTTGCGCCGTTTCAGGTCCGGGTTATTTCTCCTTCGTATTGCGGGACATGTTCACACTGAAATGCTGGTGGTGAGGGTGGAGGAAGTTCTGCGTTCGTGTCGTGTTCTTGTGTTTTGGTTTATTGCGTGTTTTCTCAGTGGTCATATCCTCGCTGGCTCGGTGTGAGCGGTAACCATAGCGACTCACTGCGTAAACGTTGCGCTCGGCTCGGTGGGTTTATTCATGCAGTATAATGAAATAAAGCGTGAAGATGAAGCTGGGTTCGGAGCTACAGGCCACACGGGTTCCGCGTCTCTGGGTTGTAGCGCAGTGCGCTAGCTCACGGCTCCGTCAATAAGAGCACTCAAACCCTGCGTTTGGGACGCAGCCATAATCATGTGAAGTGTTTGAAAGAAACGATTCTCTGATGGAGTTTTCCGCTTGCACACCACTTCTCCTGATGAGACAGAATCAATCAGCCAAAGAGTGAAGGATCATTTTATCCTGTAAAAACACACTCGGATTAGAGAACGCTAATGTGACCTTTTACACTCCGCTGCTTCAGTCGTAACTTTAAGGACAGTGACGTAGCTGCAGGACGCTtacagctccagctccagctacTCTCCACTTCTCTGAGTGGTTCTTGAGGTTTGGGGTTTTTCATACACTTCCTAATGTTCACGCTAATGCTAACTCCATGCTAACGCTATAATAATGCAATGCTAACGTCATCAGCTCAGAAGCTCATCAAATGTCGAGTTTCTGTTTACGTCACATCTAACACCATTTAGAAATTAAactgaaactgctgatgtcaCTTGGCCCCGCCCCCAAATACCATC
>TU146889
GCGTTTGTTCCGTTttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttctagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtg
>TU146890
GCGTTTGTTCCGTTttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttg
>TU146892
gtgagtgtgtgtccatcCATTTTCCCATATTTACTTCCATGTGTTTCAGTAACAGCAGTTCAGTAACAGCAGTTTCAGTAGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGTTGCTACTGAAACTGTTGCTACTGAAACTGCTGCTACTGAAACTGTTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGTTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTGAAACTGCTGCTACTgaaactgctgctgctgaaacTGCTGCTACTGAAACTGCTGCTAC
>TU146893
GCGTTTGTTCCGTTttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgtgttctagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtg
>TU146895
gtttgttccgtgttttagcgtttgttccgtgttCtagcgtttgttccgtgttctagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtg
>TU146897
GTTTtagcgtttgttccgtgttttagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgttttgtagcgtttgttccgtgttctagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgttttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtgttgtagcgtttgttccgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146887 False 303 lncRNA 0.46 2 14899 23292
TU146888 True 1158 lncRNA 0.47 2 14899 16833
TU146889 False 375 lncRNA 0.46 3 13994 15511
TU146890 False 254 lncRNA 0.46 2 13994 15158
TU146892 False 460 TUCP 0.45 2 12688 13405
TU146893 False 280 lncRNA 0.45 3 13994 15511
TU146895 False 202 lncRNA 0.46 2 14206 15511
TU146897 False 286 lncRNA 0.45 2 14899 15511

Neighbor

gene id symbol gene type direction distance location
LOC117597813 NA coding downstream 192869 216161 ~ 217382 (+)
LOC117597814 NA coding downstream 238107 261399 ~ 264259 (+)
fpgt fpgt coding downstream 311611 334903 ~ 341086 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding downstream 319370 342662 ~ 366781 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding downstream 387697 410989 ~ 456088 (+)
G124397 NA non-coding downstream 20456 43748 ~ 43957 (+)
G124398 NA non-coding downstream 24028 47320 ~ 47548 (+)
G124400 NA non-coding downstream 29556 52848 ~ 54183 (+)
LOC117597791 NA non-coding downstream 30994 54286 ~ 57248 (+)
G124405 NA non-coding downstream 50750 74042 ~ 76052 (+)
G124399 NA other downstream 25686 48978 ~ 51072 (+)
G124403 NA other downstream 46781 70073 ~ 86083 (+)
G124442 NA other downstream 154370 177662 ~ 178417 (+)
G124462 NA other downstream 249125 272417 ~ 330399 (+)
G124498 NA other downstream 376464 399756 ~ 407434 (+)

Expression


Co-expression Network