G124437


Basic Information

Item Value
gene id G124437
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 165164 ~ 167299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU146968
TGAGCAATTTAAAGTTTTACAAATAAGTGTAAAATTTGGACTTCAGCACTAACATGCAGTAACACTCAAACAACACCTGACGATCCATCCACACACTGACATCTTGAGTGATTGTCATTACAACTGACAAGGAGAtttcttcatatatatatatattctttttttgcaCATATGTTAAATATTGAGTTGcattaaacacttttaaaagcGTCTCCATTTGGATGAATAATTCTGACCAAATGGAGTAATTACggaaaacaaagtcaaaataatCTTCAGCACTTTGGTCTTACTGAGAACTCCATAATAAAAGAGATTAGAGAAAGGACAGAGCTTAAGACACTttttacaaacacaaaatacagataCACCTTACGTCCAACATTCACTCTGAAATAACAGGACAGGATAAAACCTACGGGTTAAGGGTAGCTAGGGGGCTGTCCAGATTAGGGGGACAGTATTCTTAAGGTCTTGGTTAAGAACTAGTAGTCTTGGTTAGCAGGATAGAAATATTGGTTAGAGATGAGCAGTCTTAGTTAAGGGACTAGCAGACTTGATTAGGAGAATTGCAGTCTTGGTTAGGGGACTAGCAGTCTTGGTTATGGGACTAGTAGTCTTGGTTAGGGGACTTGCAGTCTTGGATAGGAGAATAGTAGTCTTGGTTATGGGACTAGCAGTCTTAGTTACAGGACTAGTAGTCTTGGTTAGGGGACTTGCAGTCTTGGATAGGAGAATAGTAGTCTTGGTTGGGGGACTAGTAGTCCATCTGAAATGCAGCAAATTGATATTAGCCGGGATGTACTTCTTTATCAAGTATGAAACTAAATATAAAACTGTACCAAAAATCATTTCAGGAATATTTTGTAGCATTatcacactgtaataataaaatctcaaaatagATATATCGTTAATACTATGctaaagagataaaaaataatgacatcagaccacaaaaaacacatttccagGTGCAGCACATTCCTCGAAATATGTTACAAAACCCTGTATAGAGAGGTGTAAATAAAAGATTGGAAGCTGTTAGCAGATAGCATGATGTACTGAAATCGGTAGGGTAATACCGGGAATGATCatatcattaaacacttaatacttaagtataacCTGATGTTTTTTGGCATGACAGATAATTCAGCTAATCTTGCACAGTATTTACAGATCAACAATCACAATCATACACATTACCAACATTACAGCAGTTCAACCTACTACCATCACATTCACCATACAAACAACATTTATTCACCAtgaaatatgttaatatgttacTGATCAGAAGCTAATGCACTGTTTATTAATGCTGCAGACGAGATGCGGAGAAGAGTAAGTAAAATAATGTTTCATCATCGTTCAATTCCTTCATCGCGGTCAAAATCAGACACGCAGTAGGCATGTACcgatattatatattcatatcaCAATAgagtattaatattttttttaaatcacaaccTTACTAAAAAATGATTCAGAGCATTCAGGGAGACTGATCTGTCAGCGTTTCATATTCGCTCTCGTCCAGAAGACACAATGAAATCATTATCTTTTCAGAGAGGAAACATAACGATGCTCCTTCAAATCTCTCCAAAATACAGACCTTTAGACGACCTTCCTTATGCTTCGTTCtgaaagaaacatttttatctCCCTTACCAAGGCCACCTCCTCCTGAGCAGCTAAGTCTCTATGATAACAATATGGTGGGTGTGAAATATAAGGATATGTCATGGATCTGATAAATGGCACATGcctaacacatacacacattattccTGCCTTCTGAATTTCCAAAATTCATgcccttcatttttttattagccCTAAAAACCAGAGGAAGGCTTAATTCGAAACTTAAAACTAGCACAGGAAAACAATAAGTGCAATCTGAAGGCGGGGGTTCAAGTGGcatcttcttcatcatcctcaccaAGATAATAATTAAGAGTAATAACAGCACTTATGAAATCGCCGAGCTCCACAAAATCAGCCGTGATAATGTTAACACCGCTTTCACCTGGACGCTGAGAGCGAATCCACTGCATCATCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU146968 True 2073 lncRNA 0.37 3 165164 167299

Neighbor

gene id symbol gene type direction distance location
ipo11 ipo11 coding upstream 144526 112 ~ 20638 (+)
LOC117597813 NA coding downstream 48862 216161 ~ 217382 (+)
LOC117597814 NA coding downstream 94100 261399 ~ 264259 (+)
fpgt fpgt coding downstream 167604 334903 ~ 341086 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding downstream 175363 342662 ~ 366781 (+)
prkcz LOC108265357,LOC108415018,LOC108250564 coding downstream 243690 410989 ~ 456088 (+)
G124416 NA non-coding upstream 32449 132234 ~ 132715 (+)
LOC117597797 LOC108268894,LOC108261282,LOC108273219,LOC108273545 non-coding upstream 56354 104204 ~ 108810 (+)
LOC113525545 LOC108263117,LOC108268894,LOC108270753,LOC108273545,LOC108264971,LOC108273692,LOC108273546 non-coding upstream 61858 96368 ~ 103306 (+)
LOC117597868 NA non-coding upstream 68860 94047 ~ 96304 (+)
G124405 NA non-coding upstream 89112 74042 ~ 76052 (+)
G124444 NA non-coding downstream 13117 180416 ~ 181667 (+)
G124451 NA non-coding downstream 30632 197931 ~ 200943 (+)
G124453 NA non-coding downstream 39972 207271 ~ 230868 (+)
LOC117597786 NA non-coding downstream 40862 208161 ~ 209413 (+)
G124481 NA non-coding downstream 174139 341438 ~ 341758 (+)
G124403 NA other upstream 79081 70073 ~ 86083 (+)
G124399 NA other upstream 114092 48978 ~ 51072 (+)
G124387 NA other upstream 141872 12688 ~ 23292 (+)
G124442 NA other downstream 10363 177662 ~ 178417 (+)
G124462 NA other downstream 105118 272417 ~ 330399 (+)
G124498 NA other downstream 232457 399756 ~ 407434 (+)
si:ch73-70k4.1 LOC108265358 other downstream 339765 507064 ~ 508910 (+)
cept1a LOC108265319 other downstream 438560 605859 ~ 658563 (+)

Expression


Co-expression Network