Gene
RNA
| Item | Value |
|---|---|
| gene id | G124444 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 180416 ~ 181667 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU146975 | False | 317 | lncRNA | 0.58 | 2 | 180416 | 181119 |
| TU146976 | True | 377 | lncRNA | 0.58 | 3 | 180416 | 181667 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ipo11 | ipo11 | coding | upstream | 159778 | 112 ~ 20638 (+) |
| LOC117597813 | NA | coding | downstream | 34494 | 216161 ~ 217382 (+) |
| LOC117597814 | NA | coding | downstream | 79732 | 261399 ~ 264259 (+) |
| fpgt | fpgt | coding | downstream | 153236 | 334903 ~ 341086 (+) |
| tnni3k | tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 | coding | downstream | 160995 | 342662 ~ 366781 (+) |
| prkcz | LOC108265357,LOC108415018,LOC108250564 | coding | downstream | 229322 | 410989 ~ 456088 (+) |
| G124437 | NA | non-coding | upstream | 13117 | 165164 ~ 167299 (+) |
| G124416 | NA | non-coding | upstream | 47701 | 132234 ~ 132715 (+) |
| LOC117597797 | LOC108268894,LOC108261282,LOC108273219,LOC108273545 | non-coding | upstream | 71606 | 104204 ~ 108810 (+) |
| LOC113525545 | LOC108263117,LOC108268894,LOC108270753,LOC108273545,LOC108264971,LOC108273692,LOC108273546 | non-coding | upstream | 77110 | 96368 ~ 103306 (+) |
| LOC117597868 | NA | non-coding | upstream | 84112 | 94047 ~ 96304 (+) |
| G124451 | NA | non-coding | downstream | 16264 | 197931 ~ 200943 (+) |
| G124453 | NA | non-coding | downstream | 25604 | 207271 ~ 230868 (+) |
| LOC117597786 | NA | non-coding | downstream | 26494 | 208161 ~ 209413 (+) |
| G124481 | NA | non-coding | downstream | 159771 | 341438 ~ 341758 (+) |
| G124499 | NA | non-coding | downstream | 219248 | 400915 ~ 402096 (+) |
| G124442 | NA | other | upstream | 1999 | 177662 ~ 178417 (+) |
| G124403 | NA | other | upstream | 94333 | 70073 ~ 86083 (+) |
| G124399 | NA | other | upstream | 129344 | 48978 ~ 51072 (+) |
| G124387 | NA | other | upstream | 157124 | 12688 ~ 23292 (+) |
| G124462 | NA | other | downstream | 90750 | 272417 ~ 330399 (+) |
| G124498 | NA | other | downstream | 218089 | 399756 ~ 407434 (+) |
| si:ch73-70k4.1 | LOC108265358 | other | downstream | 325397 | 507064 ~ 508910 (+) |
| cept1a | LOC108265319 | other | downstream | 424192 | 605859 ~ 658563 (+) |
| G124541 | cept1a,LOC108265319 | other | downstream | 464299 | 645966 ~ 647953 (+) |
