G124511


Basic Information

Item Value
gene id G124511
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 461512 ~ 466459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147071
gtgtgtgtgtgtgtgtgtgtgtgtgtacttatagtgGCCCGTCTtgatggccagtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtacttatagcagCTCGTCtcgatggtcagtgtgtgtgtgtgtgtgtggctgtgtgtgtgtgtgtacttatagcgGCCCATCTCGatcgtcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147071 True 210 lncRNA 0.51 2 461512 466459

Neighbor

gene id symbol gene type direction distance location
prkcz LOC108265357,LOC108415018,LOC108250564 coding upstream 5424 410989 ~ 456088 (+)
tnni3k tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107710912,LOC102789447 coding upstream 94731 342662 ~ 366781 (+)
fpgt fpgt coding upstream 120426 334903 ~ 341086 (+)
LOC117597814 NA coding upstream 197253 261399 ~ 264259 (+)
LOC117597813 NA coding upstream 244130 216161 ~ 217382 (+)
LOC113541233 nceh1 coding downstream 1302 467761 ~ 478047 (+)
tnfsf10 tnfsf10,LOC108261837,LOC107663625,LOC107590350 coding downstream 23986 490445 ~ 494112 (+)
LOC113525715 ski,LOC108265356,LOC107599811,LOC106937962 coding downstream 48851 515310 ~ 534999 (+)
spag17 NA coding downstream 260333 726792 ~ 758536 (+)
LOC117597816 LOC108265208 coding downstream 292842 759301 ~ 777486 (+)
G124506 NA non-coding upstream 24539 436162 ~ 436973 (+)
G124499 NA non-coding upstream 59416 400915 ~ 402096 (+)
G124481 NA non-coding upstream 119754 341438 ~ 341758 (+)
G124453 NA non-coding upstream 230644 207271 ~ 230868 (+)
LOC117597786 NA non-coding upstream 252099 208161 ~ 209413 (+)
G124517 NA non-coding downstream 23408 489867 ~ 490074 (+)
G124519 NA non-coding downstream 28433 494892 ~ 517899 (+)
G124520 NA non-coding downstream 36989 503448 ~ 503792 (+)
G124514 NA non-coding downstream 49296 515755 ~ 537160 (+)
G124553 NA non-coding downstream 220647 687106 ~ 692246 (+)
G124498 NA other upstream 54078 399756 ~ 407434 (+)
G124462 NA other upstream 131113 272417 ~ 330399 (+)
G124442 NA other upstream 283095 177662 ~ 178417 (+)
G124403 NA other upstream 375429 70073 ~ 86083 (+)
G124399 NA other upstream 410440 48978 ~ 51072 (+)
si:ch73-70k4.1 LOC108265358 other downstream 40605 507064 ~ 508910 (+)
cept1a LOC108265319 other downstream 139400 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other downstream 179507 645966 ~ 647953 (+)
G124565 NA other downstream 238130 704589 ~ 705857 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other downstream 311505 777964 ~ 821367 (+)

Expression


Co-expression Network