G124643


Basic Information

Item Value
gene id G124643
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 922619 ~ 923124 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147247
CCCTAATCAACCCTAATGACCCTGAAGAACATCTGTATCATTAGCAGTCACTGCTTTTCTAACATCTGTATTGCTAGCAACTAGAAAGTGATGTCAGAAAatagacaacacacacaccagagcgCTCTCGAGTGTCCGATGCCACAGTAACACGGTTAAATCGGGGTGTGTTCCGTCCCCCGGAGACGTGCGCGTCCCAAATTAACGTCCCCGAGCCCTACATTTCTCAGAGTGTCGGTGCTCAAGCAGACTTTCCCGGCGTGACGCAGATGACGAGTTGTGCTCCTGAGGTCAGACAGCGACGTGTTCCTGAGGTCAGACAGCGACGCGCTCCTGAGGTCAGACAGCGTTAACAAATTATTTCATACGAGTCCCATTTACACGACTGATTTGTCTCAGTTAACAATATATAACCTTTAATAACCTCAAATTATACCTAAAGAACTGAAATTATGCCTACTGACCTGGAAAATCCCTGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147247 True 482 lncRNA 0.47 2 922619 923124

Neighbor

gene id symbol gene type direction distance location
LOC117597816 LOC108265208 coding upstream 145133 759301 ~ 777486 (+)
spag17 NA coding upstream 164083 726792 ~ 758536 (+)
LOC113525715 ski,LOC108265356,LOC107599811,LOC106937962 coding upstream 387620 515310 ~ 534999 (+)
tnfsf10 tnfsf10,LOC108261837,LOC107663625,LOC107590350 coding upstream 428507 490445 ~ 494112 (+)
LOC113541233 nceh1 coding upstream 444572 467761 ~ 478047 (+)
slc5a5 slc5a5 coding downstream 17418 940542 ~ 960999 (+)
jak3 jak3 coding downstream 42374 965498 ~ 994785 (+)
LOC113535335 NA coding downstream 323406 1246530 ~ 1255935 (+)
LOC117597828 NA coding downstream 334319 1257443 ~ 1263654 (+)
cep350 cep350 coding downstream 551977 1475101 ~ 1501389 (+)
G124556 NA non-coding upstream 194736 691007 ~ 727883 (+)
G124553 NA non-coding upstream 230373 687106 ~ 692246 (+)
G124514 NA non-coding upstream 385459 515755 ~ 537160 (+)
G124519 NA non-coding upstream 404720 494892 ~ 517899 (+)
G124520 NA non-coding upstream 418827 503448 ~ 503792 (+)
G124874 NA non-coding downstream 71728 994852 ~ 995170 (+)
G124895 NA non-coding downstream 141477 1064601 ~ 1065080 (+)
G124918 NA non-coding downstream 189930 1113054 ~ 1114384 (+)
G124947 NA non-coding downstream 305165 1228289 ~ 1229056 (+)
G125031 NA non-coding downstream 382596 1305720 ~ 1306145 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 101252 777964 ~ 821367 (+)
G124565 NA other upstream 216762 704589 ~ 705857 (+)
cept1a LOC108265319 other upstream 264056 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other upstream 274666 645966 ~ 647953 (+)
si:ch73-70k4.1 LOC108265358 other upstream 413709 507064 ~ 508910 (+)
lonrf1l lonrf1 other downstream 180591 1103715 ~ 1112067 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other downstream 232289 1155413 ~ 1201926 (+)
G125062 LOC108265639 other downstream 421212 1344336 ~ 1346585 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other downstream 880351 1803475 ~ 1806790 (+)
LOC113535242 glis1 other downstream 953904 1877028 ~ 1987572 (+)

Expression


Co-expression Network