G124874


Basic Information

Item Value
gene id G124874
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 994852 ~ 995170 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147586
CAAGAATCTAGTGCTGAGTTTGTGACAGGAACTTCCTGTTATAGCTCATAGCTTTGTGCTTTTTGCAGAAGTGTTGTGTTTGCTGCTCACTGGGCCAGGAGTACTTCTCAACACTGCACTTTATGCAAACAAGCCTTAATTACTAGATGTTTATAAAATTgcttttgtgcatttgtgtccCTGCCCTACATACGTCACACTCATGCAATACCTGACCTGTAATTCCAGAGAAATGGCAGCAGGTTAACATTGGCCTAATTAAGGGGAACTGGCTATAAAATAGAAAACTGGCTTTTAAGCTTCACCTACAGTAACCTCC

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
ko03050 Proteasome
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU147586 True 319 lncRNA 0.41 1 994852 995170

Neighbor

gene id symbol gene type direction distance location
jak3 jak3 coding upstream 67 965498 ~ 994785 (+)
slc5a5 slc5a5 coding upstream 33853 940542 ~ 960999 (+)
LOC117597816 LOC108265208 coding upstream 217366 759301 ~ 777486 (+)
spag17 NA coding upstream 236316 726792 ~ 758536 (+)
LOC113525715 ski,LOC108265356,LOC107599811,LOC106937962 coding upstream 459853 515310 ~ 534999 (+)
LOC113535335 NA coding downstream 251360 1246530 ~ 1255935 (+)
LOC117597828 NA coding downstream 262273 1257443 ~ 1263654 (+)
cep350 cep350 coding downstream 479931 1475101 ~ 1501389 (+)
qsox1 NA coding downstream 520053 1515223 ~ 1538854 (+)
lhx4 lhx4,LOC108265829 coding downstream 567579 1562749 ~ 1580727 (+)
G124643 NA non-coding upstream 71728 922619 ~ 923124 (+)
G124556 NA non-coding upstream 266969 691007 ~ 727883 (+)
G124553 NA non-coding upstream 302606 687106 ~ 692246 (+)
G124514 NA non-coding upstream 457692 515755 ~ 537160 (+)
G124519 NA non-coding upstream 476953 494892 ~ 517899 (+)
G124895 NA non-coding downstream 69431 1064601 ~ 1065080 (+)
G124918 NA non-coding downstream 117884 1113054 ~ 1114384 (+)
G124947 NA non-coding downstream 233119 1228289 ~ 1229056 (+)
G125031 NA non-coding downstream 310550 1305720 ~ 1306145 (+)
G125061 NA non-coding downstream 345716 1340886 ~ 1343920 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 173485 777964 ~ 821367 (+)
G124565 NA other upstream 288995 704589 ~ 705857 (+)
cept1a LOC108265319 other upstream 336289 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other upstream 346899 645966 ~ 647953 (+)
si:ch73-70k4.1 LOC108265358 other upstream 485942 507064 ~ 508910 (+)
lonrf1l lonrf1 other downstream 108545 1103715 ~ 1112067 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other downstream 160243 1155413 ~ 1201926 (+)
G125062 LOC108265639 other downstream 349166 1344336 ~ 1346585 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other downstream 808305 1803475 ~ 1806790 (+)
LOC113535242 glis1 other downstream 881858 1877028 ~ 1987572 (+)

Expression


Co-expression Network