doc2d (doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691)


Basic Information

Item Value
gene id doc2d
gene name doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1155413 ~ 1201926 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147646
gggacagcGGGGACGTATCCTGGTGTCTCTGTGTTATATCGTGGAGAAGACGTGTTTGGTGGTTGGGATTATTCGCTGTGCTCACCTCGCAGCGATGGACTCTAACGGCTACTCCGACCCCTTCGTCAAGATCGTTCTTCAGCCAGATATGGGGAAAAAGTCCAAGTATAAAACttcagtgaagaaaaaaacattaaacccGGAGTTTAATGAGGAATTTATATACGAGGTTCCTCACGATCAACTGGCTAAGAAGACTCTGGAAATTTCCGTGTGGGATTACGATCTGGGAATGAGCAACGATTTCATCGgaGGAGTTGAATTGGGGATCAATGCTAAAGGAGAGCGATTGAAGCACTGGTTCGAGTGTCTTAAATACAAAGGAAAGAAAGTGGAGTACTGGCACACGCTCACGCAGCAAGGGGCACCGAGCAGCGACTAACataccctctcacacacacacacacacacacacacacacacacatatacggaAGAGTACGAGTAATAATGAAATGATGCAATAAACACACTCATGAGAGTGCGACGGATGACGAAGTGGTGTCTAGATGTCACATCGTCCTTGTGTATCTGAAAACACACGCAGGTGGTGATTCGGGAAACGACCCCGCTGACGTCACACACACTTTGGAGTTGTGTAATAACCGttatgaagtgtgtgtcatGGACAATTTGCACATCAGTCAAAGCACAACCCAGGCTGGATTTTGTccttgtgtatttgtttgttgtttctgtgtccttatgtgtgtgtgagtgtgtgtgtgagtgagtgtgtgtgtgtgagtgtgtgtttgtacatacATGATTTCCTCACATCTTCCATACAGTCAGTGATGTACAGAGAGAAgtgaaacactcaaacacacacacacagaggcctgGAATAAGCTAGCATGAGAACCTTTAATCTCCTCATCAGGACAggattattattgtgtgttgcTCACCACTGGATTGTGAACAGCGACTTCAAAAATCTGTACAGCATCATGGacgttgttgtgtttgtgtgtctgtctgaacGACCTcgttgtgtaatgtgtgtgtgttcagtctaCGTTGGACGTGTCCGTGGAGTCACCTTCAAAATGTGTCCCcgttcaaaaaaaaacaaaaagcacactgatgagatgttgatgatgatgatgatgatgatgatgaagatgatggctCTCGACTGCCCTCTACTGGTGCAGCATTTGAATTGCTCAACActcaaacaccaaaaaaaaacagccaatcTCCTCTGAAGATCTGAACCAtcaaacagaaacacatcaaGTACCAACATCAAAAACGCTAAGATGCTGAAATATCAATGAGAAAAGCTCAACTATCCTCTTAGAAGCTTAAAAGGGGCTCAGTCACCAATCAGAACAACTCATTGATGATGAACCTGCTTCTGAAAATCTTAACCACCAACTTAACCACCTTCAAAGAGCCTAATCACCAATAAACAACCTACAAATATCTCAGCCTCTGATCATATGCATCCCAAAAGCCctgaaataaatcaaacatcCTCTTAGGATCTGAAACACCAACATGAAATActctagaaataaaaaaaagcctgtgaGAAGGTCAGTCAAACAGAGGAGCTCAGAAACCAGCCAAACAGTCAAAGACCTCAACCACCAATCCAACTGTCGCCAAAAACACCCAACAAAAAGCTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCGCCAATCAAACATCATATGAAGAACTCAATCTCCAATCAAACATCATCTGAAGAATTCAACCGCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATCTGAAGAACTCAACCTCCAATATGACAGCATGTGAAGAACTCCACCAATCCAACAGAATCTGAAGAACTAAACCAGAGTCAACTACCAACTACCAACTTAAACCAATCCAGAAGCTTCTGAAGAGGTCATCCACTTCCTGAACATCCAAAAATCTCATAAaccaataaaacacatcagaaatgaTTGAAATGATCAAAAAGCCTTCAAAGACTTTGTCCACCAATAAAGCAACGCCTGAAGAGCTTCACCACCAATCAGTCAGCCTCCAAAGTGTGCATACAACAAGAACTCCAGCTGGTTGATGGTTTGATTCAATCAATGACTTCCTGGAAGATCTCCACATCTCCACAACTCTGGATTCAGTGCAGGAAATCTGTAAGGATGCCGTGTGTTACTGAGAACTGTGTTTTCAGGTCTGATTTCACACAAAGCTCtctttttattgtaatgtttcaATTTTCAAAAGATCTGCATGAAGATGTTACAACAAGTTACCTGTCATCTACTAAAGACTTCATCATCAACCAAGAGTCCAGCAACGCTGGAGATTATGCAAGCTGGACTTTTTGCAAGCCATCTGTCTTTACTTTGTGGTGTTGGTGAACCAAACACTAAAACAGGGTGTTCCTTGAGTTTGAGCTAATTCATTAAGCTTCAGGCCC
>TU147647
ctcacacacacacacacacacacacacacacactcacactcacacacacacacacacacacacacatatacggaAGAGTACGAGTAATAATGAAATGATGCAATAAACACACTCATGAGAGTGCGACGGATGACGAAGTGGTGTCTAGATGTCACATCGTCCTTGTGTATCTGAAAACACACGCAGGTGGTGATTCGGGAAACGACCCCGCTGACGTCACACACACTTTGGAGTTGTGTAATAACCGttatgaagtgtgtgtcatGGACAATTTGCACATCAGTCAAAGCACAACCCAGGCTGGATTTTGTccttgtgtatttgtttgttgtttctgtgtccttatgtgtgtgtgagtgtgtgtgtgagtgagtgtgtgtgtgtgagtgtgtgtttgtacatacATGATTTCCTCACATCTTCCATACAGTCAGTGATGTACAGAGAGAAgtgaaacactcaaacacacacacacagaggcctgGAATAAGCTAGCATGAGAACCTTTAATCTCCTCATCAGGACAggattattattgtgtgttgcTCACCACTGGATTGTGAACAGCGACTTCAAAAATCTGTACAGCATCATGGacgttgttgtgtttgtgtgtctgtctgaacGACCTcgttgtgtaatgtgtgtgtgttcagtctaCGTTGGACGTGTCCGTGGAGTCACCTTCAAAATGTGTCCCcgttcaaaaaaaaacaaaaagcacactgatgagatgttgatgatgatgatgatgatgatgatgaagatgatggctCTCGACTGCCCTCTACTGGTGCAGCATTTGAATTGCTCAACActcaaacaccaaaaaaaaacagccaatcTCCTCTGAAGATCTGAACCAtcaaacagaaacacatcaaGTACCAACATCAAAAACGCTAAGATGCTGAAATATCAATGAGAAAAGCTCAACTATCCTCTTAGAAGCTTAAAAGGGGCTCAGTCACCAATCAGAACAACTCATTGATGATGAACCTGCTTCTGAAAATCTTAACCACCAACTTAACCACCTTCAAAGAGCCTAATCACCAATAAACAACCTACAAATATCTCAGCCTCTGATCATATGCATCCCAAAAGCCctgaaataaatcaaacatcCTCTTAGGATCTGAAACACCAACATGAAATActctagaaataaaaaaaagcctgtgaGAAGGTCAGTCAAACAGAGGAGCTCAGAAACCAGCCAAACAGTCAAAGACCTCAACCACCAATCCAACTGTCGCCAAAAACACCCAACAAAAAGCTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCGCCAATCAAACATCATATGAAGAACTCAATCTCCAATCAAACATCATCTGAAGAATTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACATCATCTGAAGAATTCAACCGCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATGTGAAGAATTCAACCTCCAATCAAACAGCATCTGAAGAACTCAACCTCCAATATGACAGCATGTGAAGAACTCCACCAATCCAACAGAATCTGAAGAACTAAACCAGAGTCAACTACCAACTACCAACTTAAACCAATCCAGAAGCTTCTGAAGAGGTCATCCACTTCCTGAACATCCAAAAATCTCATAAaccaataaaacacatcagaaatgaTTGAAATGATCAAAAAGCCTTCAAAGACTTTGTCCACCAATAAAGCAACGCCTGAAGAGCTTCACCACCAATCAGTCAGCCTCCAAAGTGTGCATACAACAAGAACTCCAGCTGGTTGATGGTTTGATTCAATCAATGACTTCCTGGAAGATCTCCACATCTCCACAACTCTGGATTCAGTGCAGGAAATCTGTAAGGATGCCGTGTGTTACTGAGAACTGTGTTTTCAGGTCTGATTTCACACAAAGCTCtctttttattgtaatgtttcaATTTTCAAAAGATCTGCATGAAGATGTTACAACAAGTTACCTGTCATCTACTAAAGACTTCATCATCAACCAAGAGTCCAGCAACGCTGGAGATTATGCAAGCTGGACTTTTTGCAAGCCATCTGTCTTTACTTTGTGGTGTTGGTGAACCAAACACTAAAACAGGGTGTTCCTTGAGTTTGAGCTAATTCATTAAGCTTCAGGCCC
>XM_026928160.2
gtgtgtgtgagagagagagagagagtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtggaggggatGTATATTGACTCCAGGCAGCGGtggagtgtgttcagtgtgcgTGAGACAGAGGACGAGATGGAACATCGGGACAGATGAAGACTGCAaatggtccTTCCTGTGTGTTGGTCCAGATGAGTGTGTCCAAAGCTCCTCCCAGCCACTCCCACTTCCCGTCAGGAGGCGGTCCTTCCTCTCATCTGACCCTCCCCCCGccgtcctcctcctccacgTCCCCGTCCCCCTCGTCTGTGTCCCCGCCCTCCGCCCCCCCTCCCCCATCTCCGGTGAAGATCTCCATGCAGGAACACTTCGCCATTAACGTGTGTCCCGGCCCCATCCTGCCCATCCCCAACCTGTCTGACTTCTTCCCGCGCTACCACGCCTTCCCGACCACGCCCCCTCCGCCCAGAGAGAAACCTGTCGCTCGGAcccgagagacagacagagagagggacgagGAGAGACAGGAGGATGGAGAAGAGAGGGAGGGCATGGACTCTGACGATGACGACAcgtaCCTCGGCACTCTGGAGTTCAGCCTGCTGTTTGATCAGGAGAACAACTGCCTGCACTGCACTATTCATAAGGCAAagGGACTAAAGGCCATGGACTCCAACGGACTCGCCGACCCCTATGTGAAGCTCCACCTCCTGCCTGGAGCAAGCaagGCAAATAAATTGCGCACAAAGACCCTGAAGAATACTTTGAATCCAGTTTGGAATGAGACCCTGGTTTACCATGGCATTACCGCTGCTGACATGACAACAAAAACTCTCAGgctgtgtgtgtgtgatatggaCCGTTTGGGTCGTAACGAGTTTATTGGTGAAGTGCGAGTCGCTTTAAAGAAGCTCAAAGAAGGAGAGAGCAAACGATACAACATGGGACTGGAGAGAATCGCACagGTGCGAGAAGGTAACAATCAGACGGTGGATCAGAGTTCACAACTAGCAGAGGaggagcGGGGACGTATCCTGGTGTCTCTGTGTTATATCGTGGAGAAGACGTGTTTGGTGGTTGGGATTATTCGCTGTGCTCACCTCGCAGCGATGGACTCTAACGGCTACTCCGACCCCTTCGTCAAGATCGTTCTTCAGCCAGATATGGGGAAAAAGTCCAAGTATAAAACttcagtgaagaaaaaaacattaaacccGGAGTTTAATGAGGAATTTATATACGAGGTTCCTCACGATCAACTGGCTAAGAAGACTCTGGAAATTTCCGTGTGGGATTACGATCTGGGAATGAGCAACGATTTCATCGgaGGAGTTGAATTGGGGATCAATGCTAAAGGAGAGCGATTGAAGCACTGGTTCGAGTGTCTTAAATACAAAGGAAAGAAAGTGGAGTACTGGCACACGCTCACGCAGCAAGGGGCACCGAGCAGCGACTAACataccctctcacacacacactcacacacacactcactcacacacacacacacacacacacacatatacggaAGAGTACGAGTAATAATGAAATGATGCAATAAACACACTCATGAGAGTGCGACGGATGACGAAGTGGTGTCTAGATGTCACATCGTCCTTGTGTATCTGAAAACACACGCAGGTGGTGATTCGGGAAACGACCCCGCTGACGTCACACACACTTTGGAGTTGTGTAATAACCGttatgaagtgtgtgtcatGGACAATTTGCACATCAGTCAAAGCACAACCCAGGCTGGATTTTGTccttgtgtatttgtttgttgtttctgtgtccttatgtgtgtgtgagtgtgtgtgtgagtgagtgtgtgtgtgtgagtgtgtgtttgtacatacATGATTTCCTCACATCTTCCATACAGTCAGTGATGTACAGAGAGAAgtgaaacactcaaacacacacacacagaggcctgGAATAAGCTAGCATGAGAACCTTTAATCTCCTCATCAGGACAggattattattgtgtgttgcTCACCACTGGATTGTGAACAGCGACTTCAAAAATCTGTACAGCATCATGGacgttgttgtgtttgtgtgtctgtctgaacGACCTcgttgtgtaatgtgtgtgtgttcagtctaCGTTGGACGTGTCCGTGGAGTCACCTTCAAAATGTGTCCCcgttcaaaaaaaaacaaaaagcacactgatgagatgttgatgatgatgatgatgatgatgatgaagatgatggctCTCGACTGCCCTCTACTGGTGCAGCATTTGAATTGCTCAACActcaaacaccaaaaaaaaacagccaatcTCCTCTGAAGATCTGAACC

Function

symbol description
doc2d Predicted to enable metal ion binding activity. Predicted to be located in membrane.

NR:

description
PREDICTED: double C2-like domain-containing protein beta isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147646 True 2568 lncRNA 0.42 6 1191075 1201926
TU147647 False 2210 lncRNA 0.41 3 1194061 1201926
XM_026928160.2 False 2316 mRNA 0.50 11 1155413 1200518

Neighbor

gene id symbol gene type direction distance location
jak3 jak3 coding upstream 160628 965498 ~ 994785 (+)
slc5a5 slc5a5 coding upstream 194414 940542 ~ 960999 (+)
LOC117597816 LOC108265208 coding upstream 377927 759301 ~ 777486 (+)
spag17 NA coding upstream 396877 726792 ~ 758536 (+)
LOC113525715 ski,LOC108265356,LOC107599811,LOC106937962 coding upstream 620414 515310 ~ 534999 (+)
LOC113535335 NA coding downstream 44604 1246530 ~ 1255935 (+)
LOC117597828 NA coding downstream 55517 1257443 ~ 1263654 (+)
cep350 cep350 coding downstream 273175 1475101 ~ 1501389 (+)
qsox1 NA coding downstream 313297 1515223 ~ 1538854 (+)
lhx4 lhx4,LOC108265829 coding downstream 360823 1562749 ~ 1580727 (+)
G124918 NA non-coding upstream 41029 1113054 ~ 1114384 (+)
G124895 NA non-coding upstream 90333 1064601 ~ 1065080 (+)
G124874 NA non-coding upstream 160243 994852 ~ 995170 (+)
G124643 NA non-coding upstream 232289 922619 ~ 923124 (+)
G124556 NA non-coding upstream 427530 691007 ~ 727883 (+)
G124947 NA non-coding downstream 26363 1228289 ~ 1229056 (+)
G125031 NA non-coding downstream 103794 1305720 ~ 1306145 (+)
G125061 NA non-coding downstream 138960 1340886 ~ 1343920 (+)
G125094 NA non-coding downstream 277381 1479307 ~ 1503724 (+)
G125089 NA non-coding downstream 303100 1505026 ~ 1507275 (+)
lonrf1l lonrf1 other upstream 43346 1103715 ~ 1112067 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 334046 777964 ~ 821367 (+)
G124565 NA other upstream 449556 704589 ~ 705857 (+)
cept1a LOC108265319 other upstream 496850 605859 ~ 658563 (+)
G124541 cept1a,LOC108265319 other upstream 507460 645966 ~ 647953 (+)
G125062 LOC108265639 other downstream 142410 1344336 ~ 1346585 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other downstream 601549 1803475 ~ 1806790 (+)
LOC113535242 glis1 other downstream 675102 1877028 ~ 1987572 (+)
alkal1 LOC108265007 other downstream 1014176 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 1643783 2845709 ~ 2918231 (+)

Expression


Co-expression Network