G125062 (LOC108265639)


Basic Information

Item Value
gene id G125062
gene name LOC108265639
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1344336 ~ 1346585 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147818
tgtcagtttttttttctttcgttgTTCATCATTCTgttctctcctttcttttctatcTTTTCATAGTTCTGTTTCTGACAGGCTTCCCTAGGTCAACGAGGGCGGAGCTTAAGCTTCATTTCATCGGCCAATAGCTGATGATCTTGTGAGATCATTTTAATTAgatgttgtttttcttcacacagctagctaatgttagcatttcTCCCGTTAAGTAACGGCTTGGTGTCGCTAGCTAACGTTACGTGAACGGTTTAATTGCACGTGTAATTTAATCCAGTGGACACGTTTGCTAGCAGACTAGCGGTCATTAGCTAAACTCCtgtggtgatgtcacatgattAAGTTAGCGATTggctaaataaaatttaacttaaGCTCCACTCTTGTTATTTCGGTAAAATCAGACGAGCGACGTCTCCGCCTTGTTACGTTTTTGGCAGTGCACTTCTGAAATGTCCCGGACAAATCTCCAGTAAGAAATGTCCGGACGTGATTGGCTCGTGTCAAGGCTCCGCCCACTTCCAGCCCACTGTCTCTAGCAGCGGTCGTCCTCGTCCGTGTCACTGAGGAGCTCGCAGCCTTTTCGGAAATGTCCGTTAGGCATCTGCCACGTGTGACGCAACTGAGGGGCGGAGCTTACGACATGGCCACGCCCTCGACTGGTTGCTATGGCAGCCTCAAATGTAAGCATCTCCTCTGGACTGTTGGAGTCGTCGTGCAGAGGCAGATATGGCTCCGAGGTGTAGCGCTGTGGGGAGGCGGGGCTTAACACAGACCCCGCCCCCTCTATGGCAGACTGTGTCCGTGATTGGCTGTCCTCTGTGGTCAGGTGGCTGCGGCACACCAGAGGCGAATAGGAGATGTGTGGGCGGGGCCTGGAGGGAGTCTGAGGAAGCTGGCGACGCCCCCTGGAGTCTGAGGAGGAGGGAAGTGGACTTTCTGAAGCATCGCCCtgtgtgtgttctcccctCGCTgggtgagcgtgtgtgtgtgtgttgtgtctcgTGTGTTCTTGGTTGGTTTCTCTCCTCAGAGTTGCAGCGTGATGGATCAGGTGACAGCAGGTGTTTCCTCTCCTTCGAGCGTCCTCTCTCCTTACACACCGGCTCTCTGAGGTTCGACCtgac

Function

NR:

description
PREDICTED: voltage-dependent R-type calcium channel subunit alpha-1E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU147818 True 1130 TUCP 0.52 2 1344336 1346585

Neighbor

gene id symbol gene type direction distance location
LOC117597828 NA coding upstream 80682 1257443 ~ 1263654 (+)
LOC113535335 NA coding upstream 88401 1246530 ~ 1255935 (+)
jak3 jak3 coding upstream 349551 965498 ~ 994785 (+)
slc5a5 slc5a5 coding upstream 383337 940542 ~ 960999 (+)
LOC117597816 LOC108265208 coding upstream 566850 759301 ~ 777486 (+)
cep350 cep350 coding downstream 128516 1475101 ~ 1501389 (+)
qsox1 NA coding downstream 168638 1515223 ~ 1538854 (+)
lhx4 lhx4,LOC108265829 coding downstream 216164 1562749 ~ 1580727 (+)
xpr1a xpr1,xpr1a,LOC107755298,LOC107758009,LOC107603171,LOC107699288,LOC107665065,LOC106613915 coding downstream 281493 1628078 ~ 1693853 (+)
sin3b sin3b,LOC106613916 coding downstream 354403 1700988 ~ 1726361 (+)
G125061 NA non-coding upstream 416 1340886 ~ 1343920 (+)
G125031 NA non-coding upstream 38191 1305720 ~ 1306145 (+)
G124947 NA non-coding upstream 115280 1228289 ~ 1229056 (+)
G124918 NA non-coding upstream 229952 1113054 ~ 1114384 (+)
G124895 NA non-coding upstream 279256 1064601 ~ 1065080 (+)
G125094 NA non-coding downstream 132722 1479307 ~ 1503724 (+)
G125089 NA non-coding downstream 158441 1505026 ~ 1507275 (+)
G125098 NA non-coding downstream 197251 1543836 ~ 1592893 (+)
G125116 NA non-coding downstream 271035 1617620 ~ 1618870 (+)
G125117 NA non-coding downstream 274672 1621257 ~ 1623005 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 142410 1155413 ~ 1201926 (+)
lonrf1l lonrf1 other upstream 232269 1103715 ~ 1112067 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 522969 777964 ~ 821367 (+)
G124565 NA other upstream 638479 704589 ~ 705857 (+)
cept1a LOC108265319 other upstream 685773 605859 ~ 658563 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other downstream 456890 1803475 ~ 1806790 (+)
LOC113535242 glis1 other downstream 530443 1877028 ~ 1987572 (+)
alkal1 LOC108265007 other downstream 869517 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 1499124 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1989795 3336380 ~ 3347747 (+)

Expression


Co-expression Network