G125119


Basic Information

Item Value
gene id G125119
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 1686319 ~ 1696261 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU147893
atctctctctctctctctctctctctctctctgtctccctctatcATTCCTTCTCTCTATATATCACTGTTCCTGTCTCTGGTAGTGATGTGTCCTTCACAAAAGAGTCGGCTCACAACATTCACTTAAAAGAGCCGACTCGTTTTTGtgaatctttttattttattgtttttattatttttattttttgtagatcTATGCCATTCTGTTATTTGTGCAGTGTAATTTATTGACGTtgtcataattattattattattattattattttaaaagaaaaaaacccttcttACTGATCAAAATATCACAGAAGGTCAATGAATCATTTGGGAGCCGAAAAGAGTCAACTCTTAATggtgagctgagccaaatgattTGACTCACTGATTTGATTCGTGGATAGTGTGTGTTCTTGAAACATCCTGTTCCTCTTTATCTTCctctcatttttttgtgttcgTACACAACAACAATGTCAATCTCTCGAGGATGAACAGTCAGTGTGTGAAAAATGgcattatggggaaaaaaacagatgtttatGGACGTTTTAGAAGAACGTGTGTGCTATTTTTCTTCACAAGTCTAAAAATGAAtcgtttttttttacagtgtcaTAAATGATCCATTGACACCGACCACCAAAGAGCTTCTCTGTTaccacgtacacacacacacacaaacacacacacacacacacgctagtTCTGTTGTCGCTGTGCCAGTGGTCGTGTCGCCTGCATGCTACTTCAATGTTTCCCTGTAAATAGATTTAACTTATTTTCTATAGGAATGATGGGTAATTTATTGTCTCGTTATTTATGGATAGAGCAGTATTATGATTAGCGACGGGACTCTGTCTCGTACGTGACGCTCTCGTGACTGTGGAAACGTCGACTCCTTCCATTCCACGTGCCAATTCATTACTTAGGTCCCTGTTTTGCTGAAGGACGGAGATTCCTGCAACAACAAAGGAATTAATTACACTTGATTCACTGATTTCAAGCTGGATAACATTAGCTCTtctagtgttagctagctaGTTAGCAAATCCTGGTTTAAACTACACAATGGttagctttttttaatgaatttggcTAGCTACAAGCTAACTCTAGCTACAGCTAGAGGAGTGAAATAATGTTACATGTTTTATCAGTGTGCTAAAATACAGTATTGCGATGTGAGAGTGTAAATATCGGCACACGACTTCATACATTCATAGATGTTTTGGTCACATGGTGAAGGAAGGCgtgatgaatattcatgagcaaACGGCGCCTGCTCACGCCGCATCGTTAACCTCCGAACGCGAGGGTCATTTttgtacattacatttttatacatctACAAGCTCTGACATCGTGTGTGTTCTCACGcggggggggggtgggggttgtAGGGGGCGGGGCATCCATCAGTGTCGGGTTGTGTGCACGCTAAACCCACGATGTTCCGTGCTTGTTGATATTTCTGCATCTTTTCTATCTCGATGTTGTGTCCGTTTCTTACTTTGCCGACTGTGACGATGATGTTCGTTAGCTAATCGATggataatattaataatagatagatagataaataaagcGTTGTGTGTTCGACGGAGAAGAAAAACTCGTCCTGCCGAGTCGTGTGTAAACGTGGAGTGAACTATGATGCTCGTAAACGATGCTCTTGTTTCTATTTCTGTACAACACTTTGGTGATGATGTCATAACTTGGTTTTATAAACCACGCCTATTTTTAAAACCTGCCTCCGGCTCTGAgttttttatttcagcacaC

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG:

id description
ko04721 Synaptic vesicle cycle
ko05032 Morphine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU147893 True 1782 lncRNA 0.40 3 1686319 1696261

Neighbor

gene id symbol gene type direction distance location
lhx4 lhx4,LOC108265829 coding upstream 105592 1562749 ~ 1580727 (+)
qsox1 NA coding upstream 147465 1515223 ~ 1538854 (+)
cep350 cep350 coding upstream 184930 1475101 ~ 1501389 (+)
LOC117597828 NA coding upstream 422665 1257443 ~ 1263654 (+)
LOC113535335 NA coding upstream 430384 1246530 ~ 1255935 (+)
sin3b sin3b,LOC106613916 coding downstream 4727 1700988 ~ 1726361 (+)
def6a def6,LOC107757990,LOC107550223,LOC107700524,LOC107599059 coding downstream 30547 1726808 ~ 1753281 (+)
ndufb11 ndufb11 coding downstream 59264 1755525 ~ 1759336 (+)
rhoaa LOC108265463,LOC108411640,LOC103028705,LOC107599000,LOC103466989,LOC105890655,LOC108438067,LOC103154239 coding downstream 63727 1759988 ~ 1765042 (+)
si:dkey-6n6.1 LOC108265720 coding downstream 79395 1775656 ~ 1784092 (+)
G125117 NA non-coding upstream 63314 1621257 ~ 1623005 (+)
G125116 NA non-coding upstream 67449 1617620 ~ 1618870 (+)
G125098 NA non-coding upstream 93426 1543836 ~ 1592893 (+)
G125089 NA non-coding upstream 179044 1505026 ~ 1507275 (+)
G125094 NA non-coding upstream 182595 1479307 ~ 1503724 (+)
G125129 NA non-coding downstream 66043 1762304 ~ 1763325 (+)
G125144 NA non-coding downstream 115093 1811354 ~ 1813285 (+)
G125208 NA non-coding downstream 264343 1960604 ~ 1993404 (+)
G125239 NA non-coding downstream 363056 2059317 ~ 2256786 (+)
G125276 LOC108265808 non-coding downstream 473300 2169561 ~ 2171015 (+)
G125062 LOC108265639 other upstream 339734 1344336 ~ 1346585 (+)
doc2d doc2d,LOC108265638,LOC108413517,LOC107665068,LOC107598995,LOC107755308,LOC107603001,LOC107699113,LOC107757985,LOC106602691 other upstream 484393 1155413 ~ 1201926 (+)
lonrf1l lonrf1 other upstream 574252 1103715 ~ 1112067 (+)
dennd2da dennd2d,LOC108265321,LOC108413600 other upstream 864952 777964 ~ 821367 (+)
G124565 NA other upstream 980462 704589 ~ 705857 (+)
si:ch211-229n2.7 LOC108265723,LOC103028085,LOC108411637 other downstream 107214 1803475 ~ 1806790 (+)
LOC113535242 glis1 other downstream 180767 1877028 ~ 1987572 (+)
alkal1 LOC108265007 other downstream 519841 2216102 ~ 2232140 (+)
LOC113535041 edem3 other downstream 1149448 2845709 ~ 2918231 (+)
znf692 znf692 other downstream 1640119 3336380 ~ 3347747 (+)

Expression


Co-expression Network